PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0515.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35718.2 Da PI: 7.6992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.7 | 2e-48 | 19 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF+Ptdee+v +yL +k+ ++++++ +i ++d +k+ePwdLpk ++ +e+e y++ + d++y+tg r+nratk+g+Wkatgkdk Kaladp0011s0515.1.p 19 LPRGFRFRPTDEEIVYHYLIPKAMNSNFST-AAIGQADFNKCEPWDLPKIAYMGETERYYYRQMDRRYPTGLRTNRATKAGFWKATGKDK 107 799************************999.78***************88888999********************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ ++elvg+kktLvfy+grap+gekt+Wvmheyrl Kaladp0011s0515.1.p 108 EIYKGtgnRRELVGTKKTLVFYTGRAPRGEKTNWVMHEYRL 148 ***987767778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-56 | 15 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.321 | 19 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-24 | 20 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MANSLKAARV LTEEDLMGLP RGFRFRPTDE EIVYHYLIPK AMNSNFSTAA IGQADFNKCE 60 PWDLPKIAYM GETERYYYRQ MDRRYPTGLR TNRATKAGFW KATGKDKEIY KGTGNRRELV 120 GTKKTLVFYT GRAPRGEKTN WVMHEYRLQP HFSSPMIPKN DGWAVCRVFH KNNHASGTGS 180 GSGVHEKTYC AGNSGSFSPL QRADSFSTDH LVRADFESLP PLVDLSALPP PPNMSSHLVI 240 QDLKPAMISH DYSGFQQPQP DANMWPPTDA YDDDQLIYSD IPAYYYSSIS ATLLQTPVPF 300 GHELPEDENR SMIMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-44 | 17 | 175 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-44 | 17 | 175 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-44 | 17 | 175 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-44 | 17 | 175 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-44 | 17 | 175 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-44 | 17 | 175 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-44 | 17 | 175 | 15 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620729.1 | 6e-79 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9SQQ6 | 1e-77 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A0M4FBP6 | 1e-77 | A0A0M4FBP6_MANES; NAC transcription factors 15 | ||||
STRING | cassava4.1_010179m | 2e-78 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 5e-80 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0515.1.p |
Publications ? help Back to Top | |||
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