PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0514.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38565.8 Da PI: 5.5656 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 8 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdee+v +yL +kv ++++++ +i ++d +k+ePwdLpk ++ +e+e y++s+rd+ky++g r+nratk+gyWkatgkdk Kaladp0011s0514.1.p 8 LPRGFRFHPTDEEIVIHYLIPKVMNSNFST-AAIGQADFNKCEPWDLPKIANMGETERYYYSQRDRKYPSGLRTNRATKAGYWKATGKDK 96 799************************999.78***************88888999********************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ ++elvg+kktLvfy+grap+gekt+Wvmheyrl Kaladp0011s0514.1.p 97 EIYEGtgsQRELVGMKKTLVFYTGRAPRGEKTNWVMHEYRL 137 ***987666777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-59 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.229 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-26 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEEDLMGLPR GFRFHPTDEE IVIHYLIPKV MNSNFSTAAI GQADFNKCEP WDLPKIANMG 60 ETERYYYSQR DRKYPSGLRT NRATKAGYWK ATGKDKEIYE GTGSQRELVG MKKTLVFYTG 120 RAPRGEKTNW VMHEYRLQPH FSSSMIPKND GWVVSRVFHK NNNSGGSGSG MHEKTYSDDN 180 SDSFSLVPKA DSFSTDQLFR EDFKSIPPLV DLSALPPHPP HSNASQLIKD LKPMISHDCS 240 FQQPHTDANM WPPTDAYDYD QLIYSDIPSY DYPSFSTTLL QSPDPFGYEQ PEDESNNVVG 300 ALEGNERKPG SPQCATSAEI SSHDQVYDNE VMSFFHRRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 6 | 164 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 6 | 164 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 6 | 164 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 6 | 164 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 6 | 164 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 6 | 164 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 6 | 164 | 15 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489720.1 | 2e-81 | NAC domain-containing protein 87 | ||||
Swissprot | Q9SQQ6 | 1e-80 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A1S2XI62 | 4e-80 | A0A1S2XI62_CICAR; NAC domain-containing protein 87 | ||||
STRING | XP_004489720.1 | 7e-81 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 8e-82 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0514.1.p |
Publications ? help Back to Top | |||
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