PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0011s0429.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26673 Da PI: 9.8574 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l++ ++ G + W++Ia+ g++R++k+c++rw +yl Kaladp0011s0429.1.p 34 KGAWRPEEDHILAETIAIRGAKKWSKIAALAGLNRCGKSCRLRWMNYL 81 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 87 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Kaladp0011s0429.1.p 87 RGDISAQEEDLILRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSHL 132 677799****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.369 | 29 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-9 | 33 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.57E-27 | 33 | 128 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.39E-7 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.343 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 89 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-10 | 91 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MGQVDDNKES NSSKKDEATI AKKATKPKQR AMSKGAWRPE EDHILAETIA IRGAKKWSKI 60 AALAGLNRCG KSCRLRWMNY LRPNIKRGDI SAQEEDLILR LHKLLGNRWA LIAGRLPGRT 120 DNEIKNYWNS HLSKRMRDAN GQDPERRSRS TNVKNYEDSQ GPSSSIARSN VKVNHHTNPS 180 IIAQEADQPH TKLLIENNKN EMMANSFGAS EFEFLSEGFF ELDWISSFLE FDGCS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 32 | 136 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228203.1 | 2e-67 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_020416417.1 | 2e-67 | transcription factor MYB114 isoform X2 | ||||
Refseq | XP_021800600.1 | 2e-67 | transcription factor WER-like | ||||
Swissprot | Q9FJA2 | 1e-49 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A314UT62 | 4e-67 | A0A314UT62_PRUYE; Transcription factor MYB114-like | ||||
STRING | XP_008228203.1 | 6e-67 | (Prunus mume) | ||||
STRING | EMJ17664 | 6e-67 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-51 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0011s0429.1.p |