PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0189.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 388aa    MW: 41282.1 Da    PI: 5.3724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0189.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11236281555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Kaladp0011s0189.2.p 236 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 281
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-12229285No hitNo description
SuperFamilySSF474591.57E-16229290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.964231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15233290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQPQPQCNGS SASPVDDMQH NLNLNSSTAA SPLMKFPLLP SSHHDLQTSS HHFDQMQQSF  60
DHAPPAPDDF LEQMLSTLNS ASAWDLKAAG ESSGSPEESD NGVSASAFQF DEAVAASRLR  120
AQQHHQHMLP LPFGVDNLVD RSRGSLLEGS SFDSYHPGVE NQMAGLFNGS FVGSLLGPGQ  180
QMNLPEQFQS SQQGGPSFEA PAAMNNQAPI SSSGGAAAAP PKQRVRARRG QATDPHSIAE  240
RLRRERIAER MKGLQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAGAVAP  300
LVADNMSSEG GGDSLTSRAM MRRRGINNGE VTATSTDEVE VSAAVAEKQV AKLMEEDMGS  360
AMQYLQSKGL CLMPISLAAA ISTAKIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874690.11e-101transcription factor bHLH66-like
SwissprotQ9LSQ31e-70BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A2N9G1V11e-101A0A2N9G1V1_FAGSY; Uncharacterized protein
STRINGVIT_11s0037g00040.t014e-99(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-50LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]