PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0068.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 497aa    MW: 58223.4 Da    PI: 7.825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0068.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.3e-0997124126
                          --S---SGGGGTS..--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                          +k ++C  ++rt   tC++G  C+F+H+
  Kaladp0011s0068.2.p  97 WKVAICGEYMRTRfnTCSRGTACNFIHC 124
                          899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3301.5E-21192IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003611.8E-61490IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018485.2E-202338IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549288.96E-162593IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000762.4E-43188IPR000504RNA recognition motif domain
PROSITE profilePS501029.3713194IPR000504RNA recognition motif domain
PRINTSPR018485.2E-205173IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.2E-2078102IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.1696126IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-797124IPR000571Zinc finger, CCCH-type
PRINTSPR018485.2E-20116128IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MYSGPGLAWE QDEGLEFTDE EVERSYEEFY EDVHTEFLKF GEIINFKVCR NGSAHLRGNV  60
YVHYKSLDAA LLAYRSISGR YFAGKQVKCE FVGVTRWKVA ICGEYMRTRF NTCSRGTACN  120
FIHCFRNPGG DYEWADWDKP PPNYWVKKMS ALFGYTDEYE GRRSPSQPRD TNSQKQTTPD  180
ADRHHHSRRS RSRDRDSSNF KSHRDRYKLD DPRDATRRQR HTNEGRRHVG RKKSKDTLDR  240
DCLDTGKLKN HNRGHSCSRR SSEGQTRDEE FTGSSDNEVD TNRDRSSEEP HGNWASNRSK  300
HDEVRLVRHF RGKVSRMGDS EVESDENGGS ALDQAKDYDR YNSDSWCWSK NKDSIHCTIW  360
NKGREETEDV VEDIDDQQHG HEVGERHKHQ KQNRDGCKRG DKDRIAHQLR DRDRDVNKHR  420
EGEENGDKHQ KKRRRSLEHV KESYRFSDVH ADKKKKTRFF EINGDISDSN EQHQPNSPSN  480
LKEVTVGIID DRWVPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A7e-15112351167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426433DKHQKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087628.11e-104zinc finger CCCH domain-containing protein 5
SwissprotQ6YVX91e-98C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-87C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]