PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0068.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 522aa    MW: 61192.1 Da    PI: 8.4679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09122149126
                          --S---SGGGGTS..--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                          +k ++C  ++rt   tC++G  C+F+H+
  Kaladp0011s0068.1.p 122 WKVAICGEYMRTRfnTCSRGTACNFIHC 149
                          899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501029.76327119IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.7E-2038117IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003611.2E-639115IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018486.2E-204863IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549289.37E-1650118IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018486.2E-207698IPR009145U2 auxiliary factor small subunit
PRINTSPR018486.2E-20103127IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.16121151IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7122149IPR000571Zinc finger, CCCH-type
PRINTSPR018486.2E-20141153IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MRDLRSVGVL TYSASEVHLK TYLLELLDLF LFGWSRRPGL PFTDEEVERS YEEFYEDVHT  60
EFLKFGEIIN FKVCRNGSAH LRGNVYVHYK SLDAALLAYR SISGRYFAGK QVKCEFVGVT  120
RWKVAICGEY MRTRFNTCSR GTACNFIHCF RNPGGDYEWA DWDKPPPNYW VKKMSALFGY  180
TDEYEGRRSP SQPRDTNSQK QTTPDADRHH HSRRSRSRDR DSSNFKSHRD RYKLDDPRDA  240
TRRQRHTNEG RRHVGRKKSK DTLDRDCLDT GKLKNHNRGH SCSRRSSEGQ TRDEEFTGSS  300
DNEVDTNRDR SSEEPHGNWA SNRSKHDEVR LVRHFRGKVS RMGDSEVESD ENGGSALDQA  360
KDYDRYNSDS WCWSKNKDSI HCTIWNKGRE ETEDVVEDID DQQHGHEVGE RHKHQKQNRD  420
GCKRGDKDRI AHQLRDRDRD VNKHREGEEN GDKHQKKRRR SLEHVKESYR FSDVHADKKK  480
KTRFFEINGD ISDSNEQHQP NSPSNLKEVT VGIIDDRWVP E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-143914861167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451458DKHQKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6YVX91e-87C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.14e-77C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]