PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0162.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 275aa    MW: 31061.8 Da    PI: 10.029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-0888112126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y  ++C+ ++  G C+ Gd+C FaHg
  Kaladp0010s0162.1.p  88 YSPVPCPSYRL-GRCRKGDSCEFAHG 112
                          56789******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-587116IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-687113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.92587114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-688113IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-688112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4120150IPR000571Zinc finger, CCCH-type
SMARTSM0035633122145IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQQQLSAVPR RQRGRRSKLN HAPLANSRPV AVPGATDLNE GEFSTDIFRM YKLKVSPCFV  60
AYRHDWARCP NYHQRESVRR RNPAAYQYSP VPCPSYRLGR CRKGDSCEFA HGLFETWLHP  120
AIYRTTPCRD GDRCLRKVCF FAHSANELRP IYTQTGHAER QRPSRLPPAA AAATPYGSGH  180
NGFVVPSSYD PSDIERLYRR HRRPGNSGYT VEVSDYPGPA MPPASAGTMS HNLDPESQRY  240
QSHPSNAVAL NPNRRTDLEL LAGRERSFQP QFGH*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544707.17e-49zinc finger CCCH domain-containing protein 29
RefseqXP_028201177.18e-49zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE62e-45C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0B2QUZ12e-47A0A0B2QUZ1_GLYSO; Zinc finger CCCH domain-containing protein 29
TrEMBLI1M6J52e-47I1M6J5_SOYBN; C3H-type 1 Zn transcription factor
STRINGGLYMA14G01990.23e-48(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.12e-47CCCH-type zinc finger protein with ARM repeat domain