PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0049.7.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 573aa    MW: 63080.6 Da    PI: 9.3365
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0049.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-246107199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kaladp0010s0049.7.p   6 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 94 
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kaladp0010s0049.7.p  95 G--GDGILRLGVRRA 107
                          3..677778888875 PP
2Auxin_resp1033.8e-34132213182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s G+R+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kaladp0010s0049.7.p 132 VINAISTRSVFNISYNPRGTSSDFIIPHSKFTRSLVHKFSCGTRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 213
                          6799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-403115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-383109IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-234106No hitNo description
PfamPF023626.7E-226107IPR003340B3 DNA binding domain
PROSITE profilePS5086313.5636108IPR003340B3 DNA binding domain
SMARTSM010191.0E-236108IPR003340B3 DNA binding domain
PfamPF065071.8E-28133213IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MTRHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYTLQ RPSQELVAKD LHGREWKFRH  60
IYRGQPRRHL LTTGWSAFVN RKKLVSGDAV LFLRGGDGIL RLGVRRAAQL KEKPPFPPIF  120
REQQSHGSFS AVINAISTRS VFNISYNPRG TSSDFIIPHS KFTRSLVHKF SCGTRLKMCC  180
ETEDAAERRF TGAVTGVSDL DPIGWPGSKW KCLLVEWDDS ENNLHGGRVS PWEVEPAGFV  240
VGCCMPAPSG SKRGRNGLPS TIHNSPIPDG KGLPDFRESL RFQKVLQGQE IMSLKPQNTQ  300
NHNLAESLSC YPGTDSSRIG ALGNKISRPY FGNPDFSFNN KGFGESQWFQ RVLQGQEKTS  360
NMPYGMISCT SSHDELLGIF NGIALPNFRQ TALLHDSNSQ FHAAKSSVPV SSPSSVLMFP  420
QATSLVPNPC RVPGLLEGRG IGNQGQVSPT RPYVGELPSS YIKDNFVRFE SCIPRTQFNQ  480
QDLCGHGPRP ALSGSQKLVP SCKNSCRLFG ISLTDKEHAP NVADETILKA NQLNTGPAFR  540
ITERQFLAQH PTMALGCLQK LDSASDAITY GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-786235158388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.11e-173PREDICTED: auxin response factor 3
RefseqXP_019078171.11e-173PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C11e-174A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t011e-172(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-129ARF family protein