PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0915.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 394aa MW: 44523.3 Da PI: 6.7437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.6e-53 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp +k+++++ ewyf+s dkky +g r nrat +gyWkatg+ Kaladp0008s0915.1.p 20 LAPGFRFHPTDEELVRYYLTRKVCGKNVRI-DAISEADIYKMEPWDLPglSKMRSRDLEWYFYSALDKKYGNGARMNRATCKGYWKATGN 108 579***************************.99***************6448888888******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v++ ++++vg+kktLvf+kgrap g++t+Wvmheyrl Kaladp0008s0915.1.p 109 DRSVKH-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 147 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-61 | 16 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.614 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MAIICHENKA VTSPPPPPAL APGFRFHPTD EELVRYYLTR KVCGKNVRID AISEADIYKM 60 EPWDLPGLSK MRSRDLEWYF YSALDKKYGN GARMNRATCK GYWKATGNDR SVKHESRTVG 120 MKKTLVFHKG RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ 180 YAPFDESEWD DNQLVLVPGS ETGDEGLVSD ETEPRDSSSL EGNNQDEKHQ ETQPEKTENH 240 LRERDFLGTA LVCKNEKLDS WSLPSIVRAK RPRHFGSDPS RTKSSSSSLP SDPSLSIKTA 300 VTMADAAALA ARTLLEFPKE SPQPSRFDIA SFDIPVHPSY LDLINNLQKE IHMVSADRDK 360 FRIEMMHAQA MIDVLQSRIN FLLQENEELK KSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-48 | 6 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-48 | 6 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-48 | 6 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-48 | 6 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-48 | 6 | 170 | 3 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-48 | 6 | 170 | 3 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619467.1 | 1e-135 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_016432498.1 | 1e-135 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_019234549.1 | 1e-135 | PREDICTED: NAC domain-containing protein 78-like | ||||
Swissprot | Q9SQY0 | 1e-106 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A1J6KYG7 | 1e-133 | A0A1J6KYG7_NICAT; Nac domain-containing protein 78 | ||||
TrEMBL | A0A1S3WXV3 | 1e-133 | A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like | ||||
STRING | XP_009619467.1 | 1e-134 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 3e-89 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0915.1.p |
Publications ? help Back to Top | |||
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