PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0731.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 822aa    MW: 90602.2 Da    PI: 4.7216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0731.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07361381526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+++a+ G+C  G++C+F H+
  Kaladp0008s0731.1.p 361 ICDYYAK-GWCIKGNSCRFLHV 381
                          6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.68356383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6356380IPR000571Zinc finger, CCCH-type
SMARTSM003560.007356382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4361384IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MSFDAFSNDG DDLTRSNSHP FGDDHNGGSY TGYDPRQASQ RYDGAFGDGI VDEDYVAVGG  60
GDQTPFGFDA GVTVEHETVD DGGEIYGFGS GSANPSYGQF ESVPVSNGNG QAYDLGEDDP  120
VLPPPSEMQE EGYALREWRR LNANGLTEKE RIEKEMRSGK RVEEEEDTEE DPEEEEFEED  180
PEEEEEFADD APVTDVYPLS SETKDAETLT PLSTIGTEMA MYENSGLVIT QEGGVEDMEL  240
DSEENIVHGS DVDGTVVDSV PVPVPKNIAV NTHQEVSFTP DTDALSNMTV VAESLNSSTA  300
QRGETTLNHE LKVEDGGKYM NLDLKDHAVP KASRMVATSR NKRSSSFSTQ LMDTNKRPAI  360
ICDYYAKGWC IKGNSCRFLH VKEDKNYTNK QPERGLASAN GEKHVGEGAG YDTKSIYQEP  420
HAESHTRQLH VEFNYSSHEP RFLHFVKPEF SRGLVASSSA FVGRFGPSSN VTESIDYRGN  480
QHLFNDPLQS IADRYIKQHL PPPSTTGKFS SRQISTADGS SNSAISLSSN PFDGQKILSG  540
GMDFNASSVS LGSRPLRDLS NSIELTLKVE MYKWEPSRPF RPSYYISIPH MSSPGSMYDP  600
LRDGIEQASL GVGSFKAELI HYPSHQRYPD FASEGIHFDM DKYNGAVLDK NGHSHVTGLQ  660
VAEAEVAESS VADQCNRGIA HEGDNMSGTS RRKEISETNK TNTSSAGKKN KRNKEKIHQS  720
KQVDADRGFD EAEQREPKTS KQFRAALVEF IKELLKPAWR DGNLSKDAHN LVVKKAVEKV  780
LSSLHSHQVP STPELVQQYL SSSKAKITKL VEAYVQKHNK T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-22C3H family protein