PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0542.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27467.7 Da PI: 7.7236 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69 | 1e-21 | 52 | 151 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++r++C ++ Cv+ pyfp e++++f vh++FG+ +v kll+ ++ r+++++ l + + + P+ G ++ + ++ ++ + Kaladp0008s0542.1.p 52 ACAACKHQRKRCDTNtCVFQPYFPGEKKEEFDTVHRFFGVIKVKKLLEGCEPGLpRQRMADELKWISAQLNNAPIAGPLAQFIAICSENQ 141 7***********9877**********************************99998******************************99999 PP DUF260 89 qlkaelallk 98 ++ka +++l+ Kaladp0008s0542.1.p 142 TKKAIISQLH 151 9998877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.944 | 51 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-19 | 52 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MTSSSPDVLG NEAESLRQGN GELRSGNNNA EVQGQLRSAE ALGQGNGEHR LACAACKHQR 60 KRCDTNTCVF QPYFPGEKKE EFDTVHRFFG VIKVKKLLEG CEPGLPRQRM ADELKWISAQ 120 LNNAPIAGPL AQFIAICSEN QTKKAIISQL HDYIQNLNGV LANSVAFCSN CGSAVEKPND 180 VAGQRLFPSQ SFTPDWTFNF NNNNVIAPHA GGLVSPRFAQ YRPQQMRQDG QSGQLSNIDQ 240 TTVGTAVSSD KG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-20 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0542.1.p |