PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0497.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 580aa    MW: 64822.6 Da    PI: 7.4977
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0497.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.7e-084534901954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          F +  ++yp+ +e+  LA + gLt +qV++WF N R +
  Kaladp0008s0497.1.p 453 FDNflHPYPKDSEKHMLAIHSGLTRSQVSNWFINARVR 490
                          5555589*****************************88 PP
2BELL57.14.5e-19323392272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +++++ kk +L  ll++Vd+ Y+q+   ++ v+s+F+  +g ++ ++++++ l+++S+ +++Lk++i+ qi
  Kaladp0008s0497.1.p 323 KRQVRDKKKQLTALLKMVDEGYNQCLRAVHSVVSAFHPLTGSDP-EVHARFVLQTTSFLYKSLKERISAQI 392
                          578899**************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-14256390IPR006563POX domain
PfamPF075267.4E-20265389IPR006563POX domain
PROSITE profilePS5007110.835431494IPR001356Homeobox domain
SMARTSM003894.3E-5434498IPR001356Homeobox domain
CDDcd000864.06E-9434495No hitNo description
SuperFamilySSF466895.56E-15436502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-25437500IPR009057Homeodomain-like
PfamPF059209.4E-15451490IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MHFSSYKQPF QENEMYSNMP VERPGACDGT SLRISATYPH HPPSAFDLNN QQNLMMSEYP  60
VFSAIQGEPL CISTHPVYAG SDATLAGPRL DVGNVCEEQF GEGTLVSATV LAGILASKGF  120
FHQNVDGRAF AYDDDPSTSS FNRSCNNGGE AADVWVQQPH QIIYGSSSSF DPHSTETGSC  180
HNSWAATYPR HNTLMFNSES SLSLAASQPS RICQSSISIL DQCSELSRSG ITNQHDSGWC  240
SEQSSLANTN DLSLTYPTSQ PWPASSYLKA VQQLLTELSK FALENVDLGS YSAGSPGNVA  300
SISGEYSESD GGESQEATRS LQKRQVRDKK KQLTALLKMV DEGYNQCLRA VHSVVSAFHP  360
LTGSDPEVHA RFVLQTTSFL YKSLKERISA QILNMKAADM RSDSIQEQER AFESSFIHKQ  420
WALQQLRRKE HQLWRPQRGL PERSVSVLRA WMFDNFLHPY PKDSEKHMLA IHSGLTRSQV  480
SNWFINARVR LWKPMIEEMY AEINRRKAHR RSHVGENSVR FKVKPNTRTE KMTLSSRVLQ  540
RVEHETCFRD AAAGINMARP KFLPEIKLSH VSLQVATLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-14440498563Homeobox protein Meis2
3k2a_B5e-14440498563Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-86homeobox gene 1