PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0293.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 68aa MW: 7735.75 Da PI: 10.7238 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.2e-09 | 44 | 63 | 38 | 57 |
TS-HHHHHHHHHHHHHHHHC CS Homeobox 38 gLterqVkvWFqNrRakekk 57 +L+ +++++WFqN++a+e++ Kaladp0008s0293.1.p 44 KLEGKNIFYWFQNHKARERQ 63 89****************97 PP | |||||||
2 | Wus_type_Homeobox | 42 | 2.2e-14 | 33 | 64 | 33 | 64 |
Wus_type_Homeobox 33 qritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ + ++ k+e+kN+fyWFQN+kaRerqk Kaladp0008s0293.1.p 33 EDFRGAVQARDKLEGKNIFYWFQNHKARERQK 64 5556666777799******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 19 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.64E-5 | 41 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-6 | 44 | 63 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MDVSIKCGFS SKKGVSIHEK RFTKVESNSR AAEDFRGAVQ ARDKLEGKNI FYWFQNHKAR 60 ERQKTSA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 9e-10 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0293.1.p |