PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0197.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 18596.5 Da PI: 9.822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50 | 7.2e-16 | 27 | 76 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++kG+r++k +g+Wv+eIr+p + r +lg++ tae Aa+a++ a +l+ Kaladp0008s0197.1.p 27 KKFKGIRRRK-WGKWVSEIRVPG----TpNRLWLGSYSTAEAAAAAHDVASFYLR 76 59*****998.**********82....589******************9998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.55E-17 | 27 | 81 | No hit | No description |
PROSITE profile | PS51032 | 18.584 | 28 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-22 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-22 | 28 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-9 | 28 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-15 | 28 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-8 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSNSSSSGGG GGGASEQQSK VLMSKQKKFK GIRRRKWGKW VSEIRVPGTP NRLWLGSYST 60 AEAAAAAHDV ASFYLRSSPT VEGLKEGSDV MSLSPRSVQK AASDAGMAVD AAHRVVLMQQ 120 SGGNGTSNNN GSHSRDVPVD SGREENWSFG GSWMVGDNNG GKCKPSDLNI SVDDYL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021813065.1 | 2e-37 | ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | O80542 | 3e-33 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | A0A314Y2K1 | 2e-36 | A0A314Y2K1_PRUYE; Ethylene-responsive transcription factor ERF020 | ||||
STRING | EMJ27894 | 1e-36 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 4e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0197.1.p |
Publications ? help Back to Top | |||
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