PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0138.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 263aa    MW: 28435.6 Da    PI: 6.1336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161153347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         ++T +Edel+++ +  lG++ W++Ia++++ gRt++++k++w+++
  Kaladp0008s0138.1.p 11 SFTHDEDELIIHFHSILGNK-WSLIAAKLP-GRTDNEIKNYWNTH 53
                         79******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.51158IPR017930Myb domain
SMARTSM007171.9E-14856IPR001005SANT/Myb domain
PfamPF002491.7E-141053IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-141170IPR009057Homeodomain-like
CDDcd001671.33E-121154No hitNo description
Gene3DG3DSA:1.10.10.604.0E-221155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVHSRHDSCK SFTHDEDELI IHFHSILGNK WSLIAAKLPG RTDNEIKNYW NTHIKRKLLS  60
RGIDPATHQL ITRTKAPTTT SSAVDDVVPD EDHHRNSQTT TTSTTISFAT VANMMVGNSS  120
ATVENETAAA SSISLFAGGY IDGIDTNVRH HKGFIPRTNR IEMEQHRQEG LAVAADGELS  180
LELKISPPQQ KLVSEERGLV ELDYCTSRLG LGLPTINGQD CCSCSGDEDY FSSGSGCGVS  240
GFDFLGLQGG VVGGDHGHQK QC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.16e-34myb domain protein 7