PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0006s0073.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 346aa    MW: 38033.7 Da    PI: 8.3309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0006s0073.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09180227455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+ l+P +     +K   Ka +L + ++Y++sLq
  Kaladp0006s0073.2.p 180 SHSLAERVRRERISERMKMLQALVPGC-----EKvTGKALMLDEIINYVQSLQ 227
                          8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16174242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-10174231No hitNo description
PROSITE profilePS5088815.383176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15176239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAYSYQPHH FFLSSTFFPN TPFDMSGLVN EGNISSKDSN SAIIAFANDM AASSPMGQLL  60
HEGLSDAGVI HSSKTMHSAT VSSIDVEKAE VIGEQVTQKR MSCSDHKEKN KKKTSRRGSS  120
SLNNSTQGKA KKQKKSEDGQ NVVEEQKPNK VSKKRQMDGS EDTQKDYIHV RARRGQATDS  180
HSLAERVRRE RISERMKMLQ ALVPGCEKVT GKALMLDEII NYVQSLQNQI EFLSMKLASF  240
NPIYSNFAMD LDAALLRQER LSRLLAAASQ PGGSAQQYSP TAVNYNNSST TTLSGPAVGC  300
HHHSLIETSL LLQQEAADSL SWDQMDTQTQ NLMNQFGLGN AMCTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286178.16e-87transcription factor bHLH137
RefseqXP_021286179.16e-87transcription factor bHLH137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-54bHLH family protein