PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0005s0048.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 187aa    MW: 21117.8 Da    PI: 10.0571
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0005s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.6e-201171357
                         --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eq+ +Lee +++   ++p+a ++++++++l    +++ ++V++WFqN++a+e++
  Kaladp0005s0048.1.p 11 SRWSPTQEQVMILEEIYNRggVKTPNAFQIQQITAHLsfygKIEGKNVFYWFQNHKARERQ 71
                         8*****************778**************************************97 PP
2Wus_type_Homeobox113.11.5e-36972264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +++RW+Pt+eQ++iLee+y+  G++tPn+ +iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
  Kaladp0005s0048.1.p  9 SSSRWSPTQEQVMILEEIYNrGGVKTPNAFQIQQITAHLSFYGKIEGKNVFYWFQNHKARERQK 72
                         689****************9789****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-12575IPR009057Homeodomain-like
PROSITE profilePS5007110.203672IPR001356Homeobox domain
SMARTSM003895.9E-5876IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-81171IPR009057Homeodomain-like
PfamPF000462.1E-171171IPR001356Homeobox domain
CDDcd000861.41E-41672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MASSPSGSSS SRWSPTQEQV MILEEIYNRG GVKTPNAFQI QQITAHLSFY GKIEGKNVFY  60
WFQNHKARER QKLRRKLMQS QQSQSHRQLL HHSSLHHQPH WCHHHSSLPS AALKPLHQGA  120
GKHHQEDCAT SRPALADKPI SPQPHCSVII PQQRPLKTLE LFPLRSTHLN LNADPDDKDP  180
TSPSSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259966.16e-42PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U8ADW11e-40A0A1U8ADW1_NELNU; WUSCHEL-related homeobox 3-like
STRINGXP_010259966.12e-41(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-32WOX family protein