PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0002s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40869.3 Da PI: 7.2561 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.9e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Kaladp0002s0065.1.p 34 VCTFYQK-GNCSYGSRCRYEHV 54 6******.***********997 PP | |||||||
2 | zf-CCCH | 21.5 | 4.2e-07 | 125 | 147 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg Kaladp0002s0065.1.p 125 RAICS-FAAAGSCPRGDNCPHIHG 147 78999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.549 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.6E-5 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 7.07E-13 | 181 | 255 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 9.1E-10 | 184 | 250 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.0017 | 190 | 250 | No hit | No description |
SMART | SM00184 | 4.8E-7 | 191 | 248 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 8.8E-7 | 191 | 248 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.032 | 191 | 249 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 215 | 224 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.638 | 278 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.16 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ 60 TYEVPSSASF HQPLLSEPGS VADPSQFTNN EATVSVPAWS QVPAQISLYD NEDFVDSRIL 120 DPADRAICSF AAAGSCPRGD NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL 180 QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS 240 ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC 300 FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRSTFRFSS ELHNFFVRIL FCENLSSLCI 360 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011047.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like | ||||
Refseq | XP_011011048.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like | ||||
Swissprot | Q5ZA07 | 1e-162 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2C9V7U8 | 1e-179 | A0A2C9V7U8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010375m | 1e-180 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-157 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0002s0065.1.p |
Publications ? help Back to Top | |||
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