PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0002s0017.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 351aa    MW: 38253.1 Da    PI: 8.6858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0002s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.8e-32922321128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+Ptd+e+v ++L++kv +++     ++++   ++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++    
  Kaladp0002s0017.1.p  92 LPAGVKFDPTDQEMV-QHLEAKVVATHrlhplIDEFIPtLEGEnGICYTHPEKLP-GVRKDGLIRHFFHRPSKAYTTGTRKRRKVStdee 179
                          799************.88999988777786553332322443346**********.555666677******************7333455 PP

                  NAM  80 ..sgyWkatgkdkevlskkgelvglkktLv.fy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +ge++g kk+Lv +y   gr++k+ekt+Wvmh+y++
  Kaladp0002s0017.1.p 180 ggETRWHKTGKTRPVFV-NGEVKGFKKILVvLYtnYGRQRKPEKTNWVMHQYHI 232
                          55778************.999*******9735566689**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3685251IPR003441NAC domain
PROSITE profilePS5100531.69692251IPR003441NAC domain
PfamPF023651.1E-1393232IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTWCGSSSVP NDRVVAREID IVVFPDPHPH PAQATSARDE QAGSKEKDGA RVVVAAAAQH  60
ADAKVRKLTC PSCGRHVEIQ DQGGFIQELP GLPAGVKFDP TDQEMVQHLE AKVVATHRLH  120
PLIDEFIPTL EGENGICYTH PEKLPGVRKD GLIRHFFHRP SKAYTTGTRK RRKVSTDEEG  180
GETRWHKTGK TRPVFVNGEV KGFKKILVVL YTNYGRQRKP EKTNWVMHQY HIGTGEEERD  240
GELVVSKVFY QTQPRQCGGG SGFKDIIGHG HGHSLVVEPA RSSGQQQEVA LGNVGYVEFY  300
SPQYMMGYGG STVDGGGSPL QMAPNVVVHG GGSSFIRLGG GASNESVSRK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956418.11e-131NAC domain-containing protein 10-like
RefseqXP_015956419.11e-131NAC domain-containing protein 10-like
SwissprotF4HY611e-105NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A445DQX51e-129A0A445DQX5_ARAHY; Uncharacterized protein
STRINGGLYMA07G32250.11e-129(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-106NAC domain containing protein 10