PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00462_0120
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 583aa    MW: 65169.9 Da    PI: 4.9679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00462_0120genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.6e-10546571127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ykt+lC +++r G+C+ Gd C+FaHg+
  kfl00462_0120 546 YKTRLCVHYMR-GHCRNGDWCRFAHGE 571
                    9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.14E-12300378No hitNo description
Gene3DG3DSA:3.30.40.101.5E-5301362IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500899.804301346IPR001841Zinc finger, RING-type
PROSITE patternPS005180319328IPR017907Zinc finger, RING-type, conserved site
SMARTSM006474.4E-9369445IPR002867IBR domain
PfamPF014855.8E-10383445IPR002867IBR domain
SMARTSM006470.0083456514IPR002867IBR domain
SuperFamilySSF578503.3E-16459520No hitNo description
PfamPF014853.0E-7465514IPR002867IBR domain
SuperFamilySSF902298.9E-9544576IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6545571IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-13545576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356545572IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6546571IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAAVMMEDPS LGQPAEAESA SLHLQDMEMA YKMQLHEVLL ASSHTATQNG IPAGIDDYTR  60
EILDVEVETQ EQQEALRRQT EEVERAREAT AGERAAAAAR QEAAMQYRLE KSDANFARYL  120
DELSDSEWED YGDMYDIHSL PPEERDFPEQ VQLRCLGIAE NDRAGAGALL IGSNDQPLME  180
LSPQLEGVHT ACTAELQVIL EGLRAVRALG FQRPRLALSP FVLLKLSGSV APIDATELST  240
LVAVQGLIAE LGANVKGVPI ERNKRALRLA RTSIAKYVNE PPPVLSHPVL PDEAKGVQEP  300
CPICLENHPP AAMFALARCR HKFCKACAAQ HATVRVRARA LPVPCPDPGC GGEFSREDCE  360
VVLPPDVFGL LLDVQAENCI PGEERVYCPY KDCSVMMSAG DWGGADAPSS SSHPHRTAVG  420
RVDCVNCRRP FCLECRVPWH QRMTCRQYQD LPPDQRAIED VKLHNLAAEK QWKQCPACRR  480
MIELAEGCNH MTCVCGTEFC YVCAMLWRGG RATCECPLFD DVAEENEEQV RHDYEADRRR  540
RLVRAYKTRL CVHYMRGHCR NGDWCRFAHG ENELRYPEDN MED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kbl_A6e-14300555187424E3 ubiquitin-protein ligase ARIH1
4kbl_B6e-14300555187424E3 ubiquitin-protein ligase ARIH1
4kc9_A6e-14300555187424E3 ubiquitin-protein ligase ARIH1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IFL80.0A0A1Y1IFL8_KLENI; RBR-type E3 ubiquitin transferase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP215622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-07C3H family protein