PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00412_0170
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 308aa    MW: 34339.6 Da    PI: 4.9795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00412_0170genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08237261226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    k+elC+ff+rtG C++ d+C++ H+
  kfl00412_0170 237 KRELCQFFMRTGACRHFDKCSRKHP 261
                    9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.375235263IPR000571Zinc finger, CCCH-type
SMARTSM003560.0073235262IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6236261IPR000571Zinc finger, CCCH-type
PRINTSPR018489.5E-8241260IPR009145U2 auxiliary factor small subunit
PRINTSPR018489.5E-8260280IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEQLAQPGVA PESDDGGGAV TKSDGLEGTP PTIEEVESEN APGVQGGVVS RKEKRRLAKK  60
AKRKQQRIKA AEDLKKEADA LAKDPLHQRR LLDQQAAEEQ KQRLEEEQHR QNEARWLEQE  120
RILAAATAQK LEAASIVEEE KVVKELEPTP SVPKERAEPP EAEPPQAGNT ESEEEIDGPP  180
EIIWEGNQIT VRKRKVKKSE VEPAIKEDGP THNPLYVPIQ FPDTAVLLAQ AESDADKREL  240
CQFFMRTGAC RHFDKCSRKH PYPSPSHVIM IRGMFTGLGS PGVARTEDDA NLEVQEEHLL  300
FLPVLCRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IFJ60.0A0A1Y1IFJ6_KLENI; Splicing factor U2AF 35 kDa subunit
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP592666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-09C3H family protein