PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00334_0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | GATA | ||||||||
Protein Properties | Length: 3984aa MW: 423983 Da PI: 8.8153 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 37.7 | 2.9e-12 | 335 | 369 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+ k+p WR gp+g+ktLCn CG+y+ +++ kfl00334_0040 335 CSVCHLNKSPRWRTGPEGPKTLCNRCGVYWSQNRH 369 9*****************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.7E-10 | 329 | 371 | No hit | No description |
PROSITE profile | PS50114 | 10.462 | 329 | 363 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.2E-9 | 329 | 382 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.7E-11 | 330 | 369 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.46E-8 | 334 | 370 | No hit | No description |
Pfam | PF00320 | 9.0E-10 | 335 | 369 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00384 | 33 | 726 | 738 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 27 | 812 | 824 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 2.6 | 861 | 873 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 370 | 1433 | 1445 | IPR017956 | AT hook, DNA-binding motif |
Gene3D | G3DSA:1.20.920.10 | 1.4E-11 | 2104 | 2138 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.4E-11 | 2181 | 2245 | IPR001487 | Bromodomain |
Pfam | PF00439 | 6.9E-5 | 2186 | 2233 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 9.55E-8 | 2186 | 2246 | IPR001487 | Bromodomain |
SMART | SM00384 | 360 | 2258 | 2270 | IPR017956 | AT hook, DNA-binding motif |
SuperFamily | SSF57903 | 6.58E-14 | 2284 | 2337 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 9.641 | 2287 | 2337 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:3.30.40.10 | 5.6E-16 | 2288 | 2335 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd15519 | 3.60E-21 | 2289 | 2334 | No hit | No description |
SMART | SM00249 | 1.3E-10 | 2289 | 2335 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.3E-10 | 2290 | 2336 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 2290 | 2334 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00384 | 23 | 2385 | 2397 | IPR017956 | AT hook, DNA-binding motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0043967 | Biological Process | histone H4 acetylation | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042393 | Molecular Function | histone binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 3984 aa Download sequence Send to blast |
MTVAASDGGP SDQTGSTTMQ SAENELWYSI QQTAEALPGG QISGGAAGDS VAGFLEQTAH 60 ASVVGELENA KRGSQEGAVV GPGPGKAAGA FLPEASQLEA PKQAPPADVS SPGVRQSDRL 120 QARPGSHVRT GSSAATSPRA RNSFTHARNP LGLDAREAAV AAPKLNGLAA GHARPEVALH 180 LRNLSVTDEV QEEPLPSAGA ISPAALPDAG AVFDRDPSVR PTTRTGGSYK TPESPVGLVS 240 PRAGVTSTAV LALPAPDRPV VTAVKRRAKA PPGVRAVGRG GPSQNVAVGL SQQEANRQSD 300 IEEEQSGSGL LEGGLSAGVS GRSGTTSGGK VPRECSVCHL NKSPRWRTGP EGPKTLCNRC 360 GVYWSQNRHK WDELVDRFKA SSDGEVNQLQ AEFKAVRHAK SADLEQKRAK VVRPPPRAPK 420 ALPQGTGTAR EGHRPRKASN LGRSEGHSRS DTETILRKLQ ELPGHFAKSL RKELLGFGLV 480 RSASPKPDAE GGQGGVPQQQ AEAVEEEVVI SSGSDDEGAH EQVRGSDVAG PSGRASDSLM 540 QGNGSSNNLG SAALAAGGSG SLPATTGSSF PSEGHPGENK AKRKRSETKI VRDSLTQTGG 600 KKARLMTGEA AMDDGAELRV GRKEEDVIKE AEELLRMGGL GGGAPRGTVA GHFVGKKSGG 660 QRTVKVTERK ALLHQARAEG PPPSSVGIVI NSSGLAKIRI GGVTRIVPKG EPVSGLDAYG 720 IPIPKRKGPG RPPSAAKLAE RLAAAGGSVV DLSGKKHLKV DLPGGGSAQQ AEGGLPEGMT 780 PTIRSARIKA RGPAPDFTDD FDDEGELPLV KKRGRGRPPS GKMSSLGQLP DVREGGRRYK 840 GAKRGRKPKN WTGEPGEKPL PRKRGRPANS QLEFSSKLDE FQKVFKPSVR RTKRPRHGLK 900 EPRNSVDFGS PSGEFPLVPD SLLMPPFPPV PELMLPSRLQ KARSHSPALG ASLGSLKPRL 960 PLQVDDIIVE SFGSVDPQHI TVETGRICAI GYRSTWKDPT LGLVHVSEVI AGEDGKPVYT 1020 VTCRLKERTD EEERSIGGGP RSPFGRSQSI QVQRSPRSPI QRSFSLQDGR FRLSAPSPLG 1080 QNQQSAFAKT GGLEQRAPGL AAEVKEAAVA GGEESAAIVE EKKALLPAAQ DWNAEPVPVL 1140 STVPEQAPIP EETEMAITPK EKDTTPLLEG AKPLVKEPTI SPLLVGKPGP PIEGLKGFDG 1200 GAADLHDLDT AMIWDEDFHV AFGDTERPAI GGFGPSLGDG RKSEGQELGW GFGLGSEQDK 1260 AQGSLWGGNG HVSEQEAEEG MLAVFRGTGE GPRLDFPPGP GEGARLDSPP DEAPKPEPAV 1320 PLEPSPVQSP EAADGPTARM EPDLLSGLPA TKKESPPKPA FAPAVLPQYM QGVTIRPIAS 1380 SGQPSNLLRI NTELPPLLAP LHINTQIPLD HPESPKPAGL APLRTAAEAL ANPRRPGRPK 1440 RLDTKPLPAV SIPDRQLRSE KQSQGVETPR TAHRRLTGSD LLVKRSSPEE AWRAYAAAWR 1500 ETFEARAPQH LEEIDWDEFE RDHFGLEKPE VVQWIADLFQ ASPRLTQARR SFQNLQLMQH 1560 GGPGPSLLQP ASKPDLDRPA TRAEEKEAND EAVRAKRQVA EGMRRQLVLF SDSGHAQREE 1620 EDGQKLVLEG VSIAEVQEAL QVYEQLSSVP SIHLPPLDVF LSGLIHPSVS AKSLINLEGI 1680 TRGKPKSKVP TASPLTAGAA QATAGKEGST AGKDGMPAVK ESRKPDAAEA VAALHLQLVR 1740 HAVAKLGSEA QGIPKLFSPR QETSPGPVST PPGDSFPAPE GEASEAAGLA GPPPQTPRPA 1800 EEASPGGGLS DSGEKVPARV STRAPKWKAG LTNGEAPWAL LMSRNMAKLN GMDKGAEAHH 1860 EGSPFRHGLE LLDGLTWPAF ARRVLEEEVK IPEPTVEEEA PPTAEPAPVP MVGSTEATMD 1920 PETGPLAEEE EPVPLPIILT PVEIVRRAEK EAEVLAEAER QLARAVAMLK GHEGPVTETG 1980 GPSLGTDRFG SVPPESAEPR PVSAHEALED EEPMEPLEKF EFWWSPLEGL GPMNSNQGSK 2040 IRGRIQTALA MGPPEWARAD LEKVISRDVY RSSAGGPMKR MALTVLERAH QYHVDSEKPS 2100 LAQFHTTRMC REVVRLVAEQ DDVKIFSNLP DEVENRFSLE GFRIKSEPYR VRTKGFRVSA 2160 GEKRGLKRTH EETASEEVPC GYIRTVDLRT IDMRLTARAY GSSLELFLAD VRMVWENARQ 2220 QYPPESKEVR TAEELSELFD RLYQEKVLNL GPDGLPLPKP SSRPPKDLTI RISDPVWGRL 2280 PKAPWEWEGC KVCGIDENDA QVLLCDQCSA EYHTYCLDPP LARIPDGDWL CHNCRELGPI 2340 PLASPTAGRP GRKKGSGRNR ADGRRVKVRI GGIPRRRSPG EGGGPKKRGR PLSAKGAERR 2400 AAEERTAERK AAARFARETV PGAAFRMERF SGVLALEAPE SPAIREARLA EEARAEAEAL 2460 AEAGVGPGAK PSVKVQAVQV GNPSEDVKPS VKPLESSNAS EVAVVAVPGG WESAPGTAPL 2520 EGTKLVGDVE DVKPTGAGST AEAAPGGEAR ALRSQGVVTP EKKQEKKKRK GQNQWTKRKE 2580 LAELAAKLEA EGKPVPQLPP RKHQNQYTKR KELALAAAKE GDKSPSKVPS SPERKPKAGV 2640 SVASRLKIAR GVTSAARERG SPGGKEVKVL RRVKGGGSSP DGEKSPKKKR AGEELKKGPQ 2700 NQHTKRKEGA EPGAEVKRKG ENQYTKAKRL AEEAQKEKER EKRKGENQYT KAKRLAEEAE 2760 TKKVAEAAEP KRKGENQYTK AKRLAEEAAR AKEERRAAKE RRRAEKEKRL AEEEKEGKKR 2820 GENQYTKAKK LADWGAKKPG PKKLAEGGAK KLVVAGGEVK RRGENQYTKA KRLAEEAAKE 2880 ARREKRREKR KGENQYTKAK KLALLALEGT QSDAPKTEPP AGTSAKQPVA DKEADVKPQV 2940 VEVGGVAPAV EAAKPSGSEA RLEAKPEKPP RKRENQYTKR KRLAEQGIEA KPVRAEPRSG 3000 LRSKDGEMPT LRSGATPKQE KGPNGEPVVY TRRKSARGEA KAEKEGGGKE GESSLQLVKA 3060 EPVDGEPSVP VQLSGDAQGE PSKGESEGVG VEVAGVSSVT AQAEIVSEPP AAKQTAEGGA 3120 PEAAGKPPAD KENGALRPMD VDLGASTAGH VGAADITAPP IGTPADVTAA APESVLTRAR 3180 AEAGPADVSR GVPVLEGRPA KRQRLAAAEG PSRPGGPILR ASQGGERRER RPSQSRGLTV 3240 RVTEPPKKKE RTPEQQLADR MGECAYWDLT LSERLRLFKA LAKRAADVTL SDAGQKPAPL 3300 GSDADGAHYW LLTCPSGPLL LTGKPAPPPP PTPKPASNPS APATSGESKD ETALLLPDLN 3360 AQPSPPAVEE HLKNTAEKGP IEGQPVLAQG LETGPKAEGL TPAAPSAGAA AAEEVAVSME 3420 EDGEAANAER PVPMDTDVGV KGEESGTALE TGLEEPQEEK KDGSAAGGKE EELEKVVTAD 3480 GAGVVDAVKA AEKDGNAEKV EEEEMLRKGT WSVVTSLEEL NDVRSRVTSA DGVTSAEANL 3540 REKFAACEGS LRQGLERVFG PEGKRPREEK RPREEDEGPF TSGKKPRLAE EEHAPGQTLR 3600 ATDLLLERER TAGETRAVPR CVCGEPLVVP RVHCPFCHCS AEKGTRAFSH WCDRPHGCLL 3660 LEELRRVEAS PATGPFGLPA GADPLVESQA DLEVLEGLEI DLQAVFAEGL DYPGLGGVAS 3720 APFTSLARSP PKRVALNRLH RSPNPAPSEL GPPAVPFGDA FFKPPQTSPK PEAPPLPHAQ 3780 SFPQFVPGGS AAKPPNPTAP LETSASLPAD TNALVPYNPP PAAADVSGGA PRDPSPETPR 3840 KVEDLPAETL ISKPPGPGKW LVEGQQPALA RLKMDLLDME AALAPQCLGG VRATPERCNA 3900 WRVMVKRAQS AKELANAAIL LELMIRPALI SKEWAVMGPL SRAVADGREG TVAQVALMVH 3960 SLDGVIDYEG LQSAKESSKR RRVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2kwj_A | 3e-14 | 2286 | 2337 | 57 | 108 | Zinc finger protein DPF3 |
2kwk_A | 3e-14 | 2286 | 2337 | 57 | 108 | Zinc finger protein DPF3 |
2kwn_A | 3e-14 | 2286 | 2337 | 57 | 108 | Zinc finger protein DPF3 |
2kwo_A | 3e-14 | 2286 | 2337 | 57 | 108 | Zinc finger protein DPF3 |
5i3l_A | 3e-14 | 2286 | 2337 | 62 | 113 | Zinc finger protein DPF3 |
5i3l_B | 3e-14 | 2286 | 2337 | 62 | 113 | Zinc finger protein DPF3 |
5szb_A | 3e-14 | 2286 | 2337 | 62 | 113 | Zinc finger protein DPF3 |
5szc_A | 3e-14 | 2286 | 2337 | 62 | 113 | Zinc finger protein DPF3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2881 | 2889 | RREKRREKR |
2 | 3978 | 3982 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I874 | 0.0 | A0A1Y1I874_KLENI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-08 | GATA transcription factor 12 |