PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00212_0080
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 442aa    MW: 48338.2 Da    PI: 7.0967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00212_0080genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.3e-113763127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   +++++C +++rtG+C yG +C+F+H+p
  kfl00212_0080 37 PGEPNCVYYLRTGQCGYGLSCRFNHPP 63
                   5789*********************97 PP
2zf-CCCH352.4e-1180106127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++e C ++++tG+Ck+G++C+++H++
  kfl00212_0080  80 PGQEDCGYYLKTGQCKFGPTCRYNHPK 106
                    5899*********************96 PP
3zf-CCCH36.86.7e-12128151326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +++C +++rtGtCkyG +Ck++H+
  kfl00212_0080 128 EKECAYYLRTGTCKYGVTCKYHHP 151
                    689********************9 PP
4zf-CCCH413.1e-13298324127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+++++tG+Ck+G++C+F+H++
  kfl00212_0080 298 PGQPECQYYMKTGECKFGASCRFHHPK 324
                    5789*********************96 PP
5zf-CCCH25.81.9e-08347369426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C f+ r+G+Ck+G +CkF H+
  kfl00212_0080 347 PACAFYTRYGICKFGHTCKFDHP 369
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-63663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7793664IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-83863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-54164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-44262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.08479107IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-679106IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-981106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-582107IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-5125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328125153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6125152IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9128151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4131150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145297325IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7297324IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5303324IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141343371IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6346369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5347373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDWQKRRDPD EAAWHLSQMN LQSNESEVVG GPYPERPGEP NCVYYLRTGQ CGYGLSCRFN  60
HPPDRNQGSS RGGQEFPERP GQEDCGYYLK TGQCKFGPTC RYNHPKDRAG SQGKVQLSPF  120
GLPLRPEEKE CAYYLRTGTC KYGVTCKYHH PVLPNFPDPA NLGFPSLGML ASDSQTGQTQ  180
SFPQLPHSGA PAGVPQMPWN PRAFPLPGGF PQMRLMGPSP PLLPLGQGVF NPYSTQIPRP  240
MEGLQQPTLP FLFNPQQGGQ SDQSIQPLAP PEGFPQFMQG GGFGQHAERK DVHYPERPGQ  300
PECQYYMKTG ECKFGASCRF HHPKDRSAPS PTCVLSPMGL PLRPGAPACA FYTRYGICKF  360
GHTCKFDHPV NDHLSYSPSA SSLSDMPVAP YPVTLSRTRA APLTLEARQP RVDEESATIG  420
GPADEAGGSG GAAEDESDPP LN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.11e-123zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.11e-123zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.11e-123zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBLA0A1Y1I1W90.0A0A1Y1I1W9_KLENI; Uncharacterized protein
STRINGVIT_04s0023g00370.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-93zinc finger protein 1