PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00178_0140

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

GATA

Protein Properties

Length: 1598aa MW: 167379 Da PI: 6.9056

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00178_0140	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.5	1.1e-14	1076	1109	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+++++p+WRrgp g+ +LCn CG+++ k++ kfl00178_0140 1076 CSACRVSESPQWRRGPTGPQSLCNRCGVFWYKHR 1109 ******************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50020	11.093	36	69	IPR001202	WW domain
SMART	SM00456	2.0E-4	37	69	IPR001202	WW domain
CDD	cd00201	2.71E-5	40	69	No hit	No description
SuperFamily	SSF51045	4.01E-8	41	75	IPR001202	WW domain
Gene3D	G3DSA:2.20.70.10	1.7E-8	42	70	No hit	No description
SMART	SM00456	0.054	77	109	IPR001202	WW domain
SuperFamily	SSF51045	6.97E-7	81	111	IPR001202	WW domain
PROSITE profile	PS50020	11.113	82	109	IPR001202	WW domain
PROSITE pattern	PS01159	0	82	107	IPR001202	WW domain
Gene3D	G3DSA:2.20.70.10	1.6E-9	82	110	No hit	No description
SuperFamily	SSF57716	9.03E-11	1069	1109	No hit	No description
SMART	SM00401	1.8E-10	1070	1123	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.189	1070	1108	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.7E-12	1074	1109	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.29E-10	1075	1109	No hit	No description
Pfam	PF00320	1.3E-12	1076	1109	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1598 aa Download sequence Send to blast
MVVKEGLRRD YCHLSAPCIH YGRGLRIPPP RGNPPAAAAP VWSEHRTPDG RPYYFNRAVQ 60 VCIWEKPLEL MTPQELHSLN VWKELITPDG RVYYSNRLTM ASSWTVPEDL RAAGGGWAAG 120 SKGGAAFAGP IASRAFPDAQ RADWDSLFPC IANGFPTVPA TERATPDVLR TPLDAQRTVL 180 SGRRTFSDTR QAELDSLFPC SANGFRTVLT TQPAISGGLG SAPDALWTLS EAQRTDLSGR 240 RTLSDTMQRL SDAVAGRSSA ERPLADGAIR SNQVLAGDGF TGSPDPLRTL SDAQQTDLSG 300 RRTLSDTMRR LSDAIAGCSA TEPPLQNGAI GPKRTSAGAR GLGGGEEDET HWLADLIVES 360 HEHKCGAEQV GPPLQGPNPA PQLFPNTPGL VSPPTQKASA KVTPVQPLTS PIPPPTPSYP 420 LAPSSISAWL AKPSENPQDG GKRQIVCGAG EMLDARTSAA KSGEKQSPSV NTRRPAPGVH 480 LQMAPGGVQR LVPGGAGTVT EVPLGGAWTN GTEGNGFEAG GRSEQVPGGT LPGRENGAHT 540 GVETAGQLGE LAGGPLGECG ERNGSRKGLT NDRSAEGTQP GNPATSHFVP GRDGHPGLWH 600 TILPGGVLIS QFGTPPDVNQ GSMLPPATSP ALTLQNAPVS NRGGNAAGSE TTRVAPPPIW 660 FRRRVSDNLT VFSQPPASVQ GGMSPRPATI SMNPLSAPPY AAGGSSNLCA SQAMAAELTH 720 GLSQGVAPNP GPGQMQPPTT VWGVPRLPIN PRGLGAIPIS AHPRASGAAI IALPAPGKPT 780 EGIPSQRAAG KRGRPLGSKN KSKCRQVAML SWEELQQMKA GGKESVFLAL AAYEKPAPLE 840 APDSAALSSL PEIPLDMVAP EDSARQLGPA NTPKNTPEIV PSKSPDFASE REGEPGPEST 900 PDIPPSKSPV FELGREGEPG EGNSPELMPR ESPVTETGRE EGEASADEVG HPNRAQCAPN 960 RAETGSHLAA NPDESPAEKS PNDLDECEGA ERVLDKFGRL NGAESGPNRA ETGPHPAASP 1020 YESPAGKSPN GLDWFYSLLG PSDQSPRPQA AVGGSPAVAA RPEERPETER PTARECSACR 1080 VSESPQWRRG PTGPQSLCNR CGVFWYKHRD GWGDFLEQFS PPSDGANGLP CGNEESARLD 1140 VPVAFEECPE AVEIAHQAEA AAAGSLEGSE SPDGPVSAGV RTVGRATFRE VTSEDEVAAA 1200 LEKSLRAAAT WQRMAHSLAR TTGLRSRLEE LGKGGANGGI PGGVDGAGNG SVLEASIEDG 1260 GSNYARATRS RRSRESMEKA LSGAAEGLGS GGGAAAHEDT VERDAGGQLA GGAECLENGG 1320 GAAKQTGEGT AGVQLAGAGR RYGPEEIWCG SYRGRWGPDG AFVWTDSKSR RVRFRSGGLA 1380 QLESGTPVKP KGKKRGRKPG APESASGGLA HAESGTPVTP TGKKRGPKPR VAGPSDSDAD 1440 FQARRERERK LWEKRMDGCF DRIHEIFSRA KPILAALSER FPPGEGDRPV SASPPGDPKV 1500 SPGFDTFALR GLTDWADEEW ELTPLPNGDP SHIGMERTGR HKLQETGGKE ASITGAGDRR 1560 LSRSGRGERR MKHLKVKLSR QVFVDRTLTY VKAVPLAG

Sequence ? help Back to Top

Protein Sequence Length: 1598 aa Download sequence Send to blast

MVVKEGLRRD YCHLSAPCIH YGRGLRIPPP RGNPPAAAAP VWSEHRTPDG RPYYFNRAVQ  60
VCIWEKPLEL MTPQELHSLN VWKELITPDG RVYYSNRLTM ASSWTVPEDL RAAGGGWAAG  120
SKGGAAFAGP IASRAFPDAQ RADWDSLFPC IANGFPTVPA TERATPDVLR TPLDAQRTVL  180
SGRRTFSDTR QAELDSLFPC SANGFRTVLT TQPAISGGLG SAPDALWTLS EAQRTDLSGR  240
RTLSDTMQRL SDAVAGRSSA ERPLADGAIR SNQVLAGDGF TGSPDPLRTL SDAQQTDLSG  300
RRTLSDTMRR LSDAIAGCSA TEPPLQNGAI GPKRTSAGAR GLGGGEEDET HWLADLIVES  360
HEHKCGAEQV GPPLQGPNPA PQLFPNTPGL VSPPTQKASA KVTPVQPLTS PIPPPTPSYP  420
LAPSSISAWL AKPSENPQDG GKRQIVCGAG EMLDARTSAA KSGEKQSPSV NTRRPAPGVH  480
LQMAPGGVQR LVPGGAGTVT EVPLGGAWTN GTEGNGFEAG GRSEQVPGGT LPGRENGAHT  540
GVETAGQLGE LAGGPLGECG ERNGSRKGLT NDRSAEGTQP GNPATSHFVP GRDGHPGLWH  600
TILPGGVLIS QFGTPPDVNQ GSMLPPATSP ALTLQNAPVS NRGGNAAGSE TTRVAPPPIW  660
FRRRVSDNLT VFSQPPASVQ GGMSPRPATI SMNPLSAPPY AAGGSSNLCA SQAMAAELTH  720
GLSQGVAPNP GPGQMQPPTT VWGVPRLPIN PRGLGAIPIS AHPRASGAAI IALPAPGKPT  780
EGIPSQRAAG KRGRPLGSKN KSKCRQVAML SWEELQQMKA GGKESVFLAL AAYEKPAPLE  840
APDSAALSSL PEIPLDMVAP EDSARQLGPA NTPKNTPEIV PSKSPDFASE REGEPGPEST  900
PDIPPSKSPV FELGREGEPG EGNSPELMPR ESPVTETGRE EGEASADEVG HPNRAQCAPN  960
RAETGSHLAA NPDESPAEKS PNDLDECEGA ERVLDKFGRL NGAESGPNRA ETGPHPAASP  1020
YESPAGKSPN GLDWFYSLLG PSDQSPRPQA AVGGSPAVAA RPEERPETER PTARECSACR  1080
VSESPQWRRG PTGPQSLCNR CGVFWYKHRD GWGDFLEQFS PPSDGANGLP CGNEESARLD  1140
VPVAFEECPE AVEIAHQAEA AAAGSLEGSE SPDGPVSAGV RTVGRATFRE VTSEDEVAAA  1200
LEKSLRAAAT WQRMAHSLAR TTGLRSRLEE LGKGGANGGI PGGVDGAGNG SVLEASIEDG  1260
GSNYARATRS RRSRESMEKA LSGAAEGLGS GGGAAAHEDT VERDAGGQLA GGAECLENGG  1320
GAAKQTGEGT AGVQLAGAGR RYGPEEIWCG SYRGRWGPDG AFVWTDSKSR RVRFRSGGLA  1380
QLESGTPVKP KGKKRGRKPG APESASGGLA HAESGTPVTP TGKKRGPKPR VAGPSDSDAD  1440
FQARRERERK LWEKRMDGCF DRIHEIFSRA KPILAALSER FPPGEGDRPV SASPPGDPKV  1500
SPGFDTFALR GLTDWADEEW ELTPLPNGDP SHIGMERTGR HKLQETGGKE ASITGAGDRR  1560
LSRSGRGERR MKHLKVKLSR QVFVDRTLTY VKAVPLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2l5f_A	1e-13	38	115	12	90	Pre-mRNA-processing factor 40 homolog A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1I7R9	0.0	A0A1Y1I7R9_KLENI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26930.1	2e-08	GATA transcription factor 23