PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00173_0180
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 507aa    MW: 53004.3 Da    PI: 8.3841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00173_0180genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-083758426
                   ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                   ++Crff++ G C +Gd C+F+H 
  kfl00173_0180 37 VPCRFFLE-GKCERGDACNFSHN 58
                   69******.*************6 PP
2zf-CCCH21.54.1e-07169192226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    k+  Cr+++  G C+ G++C+F H+
  kfl00173_0180 169 KRGVCRYWLG-GSCRNGANCNFLHV 192
                    7889**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3193360IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-43459IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63758IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-63858IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-53859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6168191IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5169193IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5169192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5171191IPR000571Zinc finger, CCCH-type
SMARTSM003207.7E-6198237IPR001680WD40 repeat
SuperFamilySSF509781.28E-46200502IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.4E-10200273IPR015943WD40/YVTN repeat-like-containing domain
CDDcd002003.43E-42201499No hitNo description
PfamPF004001.5E-4202237IPR001680WD40 repeat
PROSITE profilePS5008214.385205246IPR001680WD40 repeat
PROSITE profilePS5029428.027205410IPR017986WD40-repeat-containing domain
PROSITE patternPS006780224238IPR019775WD40 repeat, conserved site
PRINTSPR003202.2E-7224238IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.101.3E-39274502IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.013279316IPR001680WD40 repeat
PfamPF004000.0023283315IPR001680WD40 repeat
PROSITE profilePS5008210.208286325IPR001680WD40 repeat
SMARTSM003207.3E-6323360IPR001680WD40 repeat
PfamPF004002.7E-4325360IPR001680WD40 repeat
PROSITE profilePS5008211.678330361IPR001680WD40 repeat
PROSITE patternPS006780347361IPR019775WD40 repeat, conserved site
PRINTSPR003202.2E-7347361IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2E-4364401IPR001680WD40 repeat
PfamPF004000.0037365400IPR001680WD40 repeat
PROSITE profilePS500828.771371410IPR001680WD40 repeat
PRINTSPR003202.2E-7388402IPR020472G-protein beta WD-40 repeat
SMARTSM0032065418460IPR001680WD40 repeat
SMARTSM003205.6463500IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MQIDSDNSRG GRGPVWRGGG RSAGRSGGRS GGGTANVPCR FFLEGKCERG DACNFSHNVD  60
PGAVANGRKR ISERGPAAHD PRPGASFGGG RNGLGPSGSA FDRLGGQSGQ SPFDRLGGGA  120
PQAPPAAGSG YGAYGGGGMQ NGGQGGRGQQ ARFGRRGGGA GRSGPQQQKR GVCRYWLGGS  180
CRNGANCNFL HVHATAPDVD LMTELKGHEK AVRAIALPAG SSELYTGSQD QSIRVWDCET  240
GQCKSVVPMG GDVGALLTEA GFLFVGLPNE IKVWNMQSAP PAQHSLPGHV GQVHSLAVGN  300
NMLFSGAQDG TIRCWVLNTT SQNFEHVGTL SGHTAPVVTL QCAANKLYSG SMDKSIRVWD  360
LTANGACIQT LTAHENVVMS LLCWDQYLIS CSLDNTIRVW GLNPAGQLEN TYTYPEVEAG  420
AVRAAQTPQD GALALCGSLD EAGKPILVCA YNDNSVRLYD LPTFQERGIL YSSREVRTLL  480
AGPSGLLFTG DSAGLVKVWT WKKAAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-2920550210323Tako8
6g6n_A9e-2920550210323Tako8
6g6n_B9e-2920550210323Tako8
6g6n_C9e-2920550210323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632GGRSGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391880.11e-142zinc finger CCCH domain-containing protein 17-like
SwissprotQ9FNZ11e-116C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A1Y1HZE70.0A0A1Y1HZE7_KLENI; WD40 repeat-containing protein
STRINGPP1S374_36V6.11e-142(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-120C3H family protein