PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00120_0240
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 308aa    MW: 33561 Da    PI: 6.0277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00120_0240genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.9e-12199224126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   lC+++ +tG+C +Gd CkF+H+
  kfl00120_0240 199 YQPDLCKDYKETGYCGFGDACKFMHD 224
                    6789*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-9197229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596198226IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7198225IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10199224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-12199229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGVNNGVPA GEQGLPGQAA VPSEAGPERA QAGGGATGGE SNIVFKKKAP SKNVRRRARD  60
DGDDDDAAGG ASAVVKKSSK QPRWEKDAGT PDEAGAQKKA GFVFDSSRQV QVVGDAGATR  120
TNEMETEFDK DGRALREQQL KKAGQGKEVD DKVYRGMNAY TDHRAGFRRE HTIAGEKGGG  180
AHGPLRASAH LRASVRFDYQ PDLCKDYKET GYCGFGDACK FMHDRGDYKS GWQMEKEWDE  240
KEKLRKARLA QGVEEEQEDD DEDSDEDALP FACFICRQPF KDPVPTGGVF NTAHEIIKKM  300
KEEKTKVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-5210130497321RING finger protein 113A
5z58_M8e-5210130497321RING finger protein 113A
6ff4_t8e-5210130497321RING finger protein 113A
6ff7_t8e-5210130497321RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382662.11e-105zinc finger CCCH domain-containing protein 15-like
SwissprotQ8GX841e-93C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1Y1HVP40.0A0A1Y1HVP4_KLENI; Uncharacterized protein
STRINGPP1S114_84V6.11e-104(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-85C3H family protein