PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00108_0210
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 425aa    MW: 44410.1 Da    PI: 5.6274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00108_0210genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-066692127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ykt+ C++ a  G C+y ++C++aH++
  kfl00108_0210 66 YKTRMCKNLAFPGGCPYHEKCNYAHSE 92
                   9************************95 PP
2zf-CCCH35.31.9e-11159185127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt++C  + r G C+yGdrC FaHgp
  kfl00108_0210 159 WKTKICTSWDRHGSCSYGDRCGFAHGP 185
                    8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-146398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-96497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0476593IPR000571Zinc finger, CCCH-type
SMARTSM003563.66592IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16154189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-9155190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131158186IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7158185IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9159185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MQSGGLPPNG PYGRIPSFGS EGEPPMKRMR DGNGPPQPMW GGPGGPGPRP PMQDPGKDRS  60
MASVFYKTRM CKNLAFPGGC PYHEKCNYAH SEEELRTLPP EYADGPPERP PLQGPPPGGA  120
NFEPDGPPGP GPGPPHEGFG GFGGPPTRPP PATPKPPNWK TKICTSWDRH GSCSYGDRCG  180
FAHGPHELRA YGPVVEDAIK PGPGPAFHGG GPPFPGGGPP PFGGPPGPRP NGFPQEEPGK  240
DSGLGPGMDS ARSDGSNGAF ESGPLVLTVD LDLIHGDSIF EEDLEDESFK PGDPGEKNAR  300
PGGENEPGPT PSNQNRPPDM PRRDGFDGFR GPPDGMPPGP WMHRPPFFRG GPGWGEGPPR  360
GFPPFGPRGP GFHFGGPGDF GPPPEAFYGG FGPRGPPPNF EGGPPRGWGA RGRGPGQFEM  420
EQPAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HUN70.0A0A1Y1HUN7_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.17e-10C3H family protein