PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00028_0220
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 687aa    MW: 75675.2 Da    PI: 8.2809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00028_0220genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07307327526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C  Gd C FaHg
  kfl00028_0220 307 PCPDFRK-GACAKGDACDFAHG 327
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.71E-1076162No hitNo description
SuperFamilySSF484031.46E-1080163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.55783160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.08483113IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.208.5E-1383167IPR020683Ankyrin repeat-containing domain
PfamPF136375.2E-685140No hitNo description
PROSITE profilePS5008810.606118153IPR002110Ankyrin repeat
SMARTSM002480.82118150IPR002110Ankyrin repeat
SMARTSM003560.0012302328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5307328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868307329IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4307327IPR000571Zinc finger, CCCH-type
SMARTSM00356110337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MRVPHGREEM QRRNKNGHVD EGPVEMDLAA FLRSAGRGPS LLDLAAKDEL AAFRYSVLEE  60
GLDVDALYTW YGRRDGSDEL LVDQRTPAMV AAEHGGVNVL SFILSSGPVD VNRRSRVDGR  120
TALHFCVAGG SQRAAEAASM LLKAGADRSV KDLAFGRRPL DMIYSEDAQV RASLERQLLA  180
PAPIREWTNV PAVAVDIPGS PLARAHANPV SPRHEYLSPE FAATERGSPL APGPYEARRD  240
HRGFVLDPTI PDVTSSVYMS DEFRMFSFKI KPCSRSYSHD WTDCPFAHPG EAARRRDPRQ  300
HPYSCLPCPD FRKGACAKGD ACDFAHGVFE SWLHPAQYRT RLCKDGPGCD RRVCFFAHLP  360
EELRPLSSNW GHALPLSYAS PMSPSPLEKQ NQRQFSPPLP VSPSSVLLKQ GPFSPGPGSP  420
VAKQPSPPQA FLSPPRSPSE NLDYFSLRAP QMIRPQHLSG EFRRELDLAY EEAMSPRVAR  480
GPLMSPHEVS REEEAARVRQ LGDAYEARRL AAELGSLNLG GRARPLGPHH SPRFRPHSST  540
APPVPPMRAA SGEELFRTYD RPQSPQMPLE RQVRNPRSPL GGAVGLPAVQ GGPSGRAGGF  600
GSPRSMSQEN MVQNGLVLDS QRLAHSRFAR SNTWQGQISD WGLPGGAPEW GAKREDVESA  660
RAKHHVGGEG REPDISWVQR MIEEEKI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HRX30.0A0A1Y1HRX3_KLENI; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.18e-92CCCH-type zinc finger protein with ARM repeat domain