PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00026_0390
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 532aa    MW: 58866.3 Da    PI: 8.949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00026_0390genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-09151171526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++f++ GtC++Gd C FaHg
  kfl00026_0390 151 ACPDFRK-GTCRRGDACEFAHG 171
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.48E-5145175IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6146172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929147173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6150173IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7151171IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709181205IPR000571Zinc finger, CCCH-type
SMARTSM0035649181204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MMMFEEPMAY PSASDASRYH ALRLEENRDQ QGRNIASPRQ VSSLQNYAAD LMAAAAAIQA  60
HRDSSKYLDA EVERAMSAFG PRKDTDDEQW GHEKGEGGLD IYSCDQFRMY EFKVRRCMRG  120
RSHDWTECPF AHPGEKARRR DPRKYHYSGT ACPDFRKGTC RRGDACEFAH GVFECWLHPA  180
RYHTQPCKDG LKCRRRVCFF AHTPEQLRLL PAAAAAANHA DKPHQKQGSP TKRQMTPDNA  240
YSPIQPGSPA SAQPYYNSNP SLGGGQQVPP MSPLGHTAPF SPRQSYRASN YPNNQMPPRS  300
QAPTGTPRLE RPSSLPPRLQ LPSIEEQIQQ AQLAAALVAA SQSPASSPIP ISGGSGRHYD  360
ESQQRMAEIL AAHLCQLEIR GASTPGANWP QYPPPSPQSQ RSSMDLPPSQ RSSFDMGGFS  420
QRSSFDLGYS DNRGGSIDLR SSHRESMDYG SRRSSFDYAN FQMNSPAVRR TISVPASPAT  480
RQSNPWEAAN EAEFQLPQRV ESGKDLRAAI YGRLGANGQG RSEGGNSRIC SG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HMJ10.0A0A1Y1HMJ1_KLENI; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-71C3H family protein