PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00012_0300
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family bHLH
Protein Properties Length: 548aa    MW: 57559.7 Da    PI: 9.612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00012_0300genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11306351555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR++i +++ +L+ l+P+      k ++Ka++L + +eYIk +q
  kfl00012_0300 306 HSIAERLRREKISERMRQLQALIPHH-----KSNDKATMLGEIIEYIKFMQ 351
                    99***********************9.....56***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-11299355No hitNo description
PROSITE profilePS5088815.618301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14301361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14305358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-11307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNLAQGGGEG LQGTEAPPFQ MNVPEQASPA HFGAQRRLSL DQYYPGAIPE RPSAADITAR  60
FILAQQDRMD QRKQLREQAR QREAQQFGGI GSPQASYPTA ASMATAQKAA KLWQSGPLQE  120
ALNEFVGEPP QSMHSGMLPQ DNPAGARARA RGLAYPSGQS FTVKAGPSGA AGQGGQRPGD  180
AQSETSGKRG VPGGSGDEAS AESAPQRKKA RKPTPAASNP LELRIPPAPV FTAGGPPAPI  240
DPPTQYLRRP GLEPSVRPSK IAPGLPFIYQ PPTASLDFQQ EKKEEVLPET HIKTTRARRG  300
QATDPHSIAE RLRREKISER MRQLQALIPH HKSNDKATML GEIIEYIKFM QLQVHVLGLG  360
KDTAAPLATR MVLGLGKDAA APLATALPAG LPEVAKGPAE GPLPVQDASV AQDLLNHLET  420
GPERAVQYLL ERGLCLMPAP LAAQVLRSGP ASDQQTAPPA GQATSGTVVQ DQSASVASSA  480
PSNVHVPSAT QPAPTEHDVT PTTAVLSGWA EEEGTDRPAG TRRTSGGLAV PTGVQPSSRS  540
GTQPGQGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HKB50.0A0A1Y1HKB5_KLENI; Basic helix-loop-helix DNA-binding superfamily protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-31LJRHL1-like 3