PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00032389-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 264aa MW: 30255.7 Da PI: 7.1293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00032389-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.4	2.2e-43	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF Pt+eelv++yL++k+eg++ +++vi+ +diy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+ gyW WALNUT_00032389-RA 4 LPPGFRFYPTEEELVSFYLHNKLEGTRedlnRVMDRVIPVLDIYESNPWDLPQfsgdLCYGNPEQWFFFIPRQEREARGGRPRRLTTIGYW 94 79**********************966643344579999*******656764455778*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 katg+ + v+s+k++ +g+k+t+vfy+grap+g+k++W m+ey+ WALNUT_00032389-RA 95 KATGSPNYVYSSKNRIIGVKRTMVFYHGRAPNGRKSEWKMNEYK 138 *****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-47	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	48.98	4	166	IPR003441	NAC domain
Pfam	PF02365	1.5E-22	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDDLPPGFRF YPTEEELVSF YLHNKLEGTR EDLNRVMDRV IPVLDIYESN PWDLPQFSGD 60 LCYGNPEQWF FFIPRQEREA RGGRPRRLTT IGYWKATGSP NYVYSSKNRI IGVKRTMVFY 120 HGRAPNGRKS EWKMNEYKAI EGEASASTGA VPTLRQEFSL CRVYKKTKCL RAFDRRPTGS 180 VVIGHGEPAT QQIHHGDDQA VPRSSGLNLP FTDQRTTSPE SSSSGDHGQP GREGKNKGMA 240 VDDDQSLWDW DQQLNNWFRP DGME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-33	4	166	17	165	NAC domain-containing protein 19
4dul_B	2e-33	4	166	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018849266.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Refseq	XP_018854048.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-75	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I4HD09	0.0	A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like
STRING	EOY08332	1e-112	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-77	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]