PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031751-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 158aa MW: 17868.1 Da PI: 7.6629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031751-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.9e-10	46	86	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P K++ +++Le+A++Y+k L WALNUT_00031751-RA 46 ARERRHRISDRFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFL 86 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.364	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-14	42	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-13	43	90	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-12	43	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-12	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	46	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MDYFSTANPS SSEFSSVANS SKEKKIKGGK RSKGVKLSTD PQSVAARERR HRISDRFKIL 60 QSLVPGGSKM DTVSMLEEAI HYVKFLKTQI WLHQTMINFV DEDPSCFLAP SFPSHDQQNF 120 YAENSLVDQV QPSSPPLPLP NSYFQTEETV SLDPYVKY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859333.1	1e-115	PREDICTED: transcription factor bHLH140-like
Swissprot	Q9M041	3e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A2I4HT54	1e-113	A0A2I4HT54_JUGRE; transcription factor bHLH140-like
STRING	EMJ07982	2e-52	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	4e-33	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]