PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031603-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 521aa    MW: 59312.6 Da    PI: 5.5128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031603-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS207.47.9e-64253519100374
                GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslR.iTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                         qaI e +++e+++H iD++i  G++W  L+qaLa+R++ p +lR iT+vgs      +  e+tg+rLa+fAe+l++pf+f+ ++ ++++d 
  WALNUT_00031603-RA 253 QAIIENIASEHKIHLIDIGIRCGVHWTVLMQALADRQGCPIELRkITAVGS------TDSEKTGKRLADFAESLKLPFSFKSVLLSDMKDA 337
                         9************************************99999966******......7899****************************** PP

                GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                         + e ++++ +Ea++V   + l+++ + + sle+    ++k+++ +l P ++vv+e ea++ns+sF++rf++al ++sa++ds+e  l + s
  WALNUT_00031603-RA 338 REELFETEDDEAVIVYAPYILKTMISTPRSLEN----LMKVIRnDLYPCIMVVIEVEANYNSPSFVDRFIDALFHFSAFYDSFEGCLKQYS 424
                         *************************99999999....99999846********************************************** PP

                GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                         e+ri +E+  +g++i+n+va eg++r+ r  tl  Wr+ ++++ + ++ +se    qa+l+++k++     +++++ ++l+ gWk+ p+ s
  WALNUT_00031603-RA 425 EDRIRMEAI-FGEAIRNIVAEEGRQRTVRSVTLDVWRAFFRRFRMVEIGMSELSFRQASLVVKKFAcRSSCTIDKKGKCLIVGWKGTPIHS 514
                         *******99.********************************************************9889********************* PP

                GRAS 370 vSaWr 374
                         +S W+
  WALNUT_00031603-RA 515 LSIWK 519
                         ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.984253498IPR005202Transcription factor GRAS
PfamPF035142.7E-61253519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDNIFSFPPS NFDAVQESFG YPEDLEIEEL PTFKEKQDHL AEMEVGEANP LISSQYGFHH  60
QEDMAKKVAA YLLKGQRQHS QNPQPYRLTD LMLDAVSPQT QPTQVSAGLA RIPETGPDFP  120
EQDKQIPHPF SLASLKLLTD YGSGFKKLKG ERLSDESTES TCVASCRLST EEIMRVAGGR  180
YIQFRHQMYD DYYMPTHSFG FALPGDLSED EKRDVELAHL LLAAAEEVGF QQYDHASRLL  240
SRSEWISSAR GIQAIIENIA SEHKIHLIDI GIRCGVHWTV LMQALADRQG CPIELRKITA  300
VGSTDSEKTG KRLADFAESL KLPFSFKSVL LSDMKDAREE LFETEDDEAV IVYAPYILKT  360
MISTPRSLEN LMKVIRNDLY PCIMVVIEVE ANYNSPSFVD RFIDALFHFS AFYDSFEGCL  420
KQYSEDRIRM EAIFGEAIRN IVAEEGRQRT VRSVTLDVWR AFFRRFRMVE IGMSELSFRQ  480
ASLVVKKFAC RSSCTIDKKG KCLIVGWKGT PIHSLSIWKF H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2625351999375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_006492448.11e-144(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-48RGA-like 2