PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031015-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 229aa MW: 26908.4 Da PI: 7.0715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031015-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.9	1.1e-27	79	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++ +k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e WALNUT_00031015-RA 79 WVQDETRSLITMRREMDGLFNISKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 160 ******************************************************************84...556899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-5	69	140	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.537	71	135	IPR017877	Myb-like domain
SMART	SM00717	1.2E-4	75	137	IPR001005	SANT/Myb domain
CDD	cd12203	5.15E-26	77	142	No hit	No description
Pfam	PF13837	3.3E-21	78	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MYLSENPRPI DFYKEEGPRD MIIEVVTNAD LPPHHHQPHP HPHHQQIILG DSSGGDEDHE 60 VEVEVEVEVK APKKRAETWV QDETRSLITM RREMDGLFNI SKSNKHLWEQ ISSKMREKGF 120 DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE DILRERSKNA QYKSPTPPKV 180 DAFIQFSDKG MDLTSVSCFY FWKNWNWVRT ENTLLYKNSD ASCWVIPVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-52	73	158	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018856746.1	1e-173	PREDICTED: trihelix transcription factor GT-1-like
Refseq	XP_018858471.1	1e-173	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	7e-79	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2I4HKQ7	1e-172	A0A2I4HKQ7_JUGRE; trihelix transcription factor GT-1-like
STRING	XP_008222025.1	2e-97	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	3e-80	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]