PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030901-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 459aa    MW: 52512.8 Da    PI: 4.8322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030901-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1463.7e-45884562374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++++ elaq +L r+se +sp g++++R+a+++ + + +   +     y  l+ +     +s++  aa+++f++ +P  k
  WALNUT_00030901-RA  88 DHLLKAYGEALEKDERELAQVILRRISEKVSPIGESLERVAFFLSQDIDQNQGD-----Y--LKLE-----SSKNFEAAFQAFYQSFPEGK 166
                         578888999*********************************976666555444.....2..2222.....255677899*********** PP

                GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181
                         f+h +aN+aIlea+  + +++Hi+Df +++G+QWp++++a+a +     +lR+T ++ +e++ s  + eet++rL+k A+ lg++++ + +
  WALNUT_00030901-RA 167 FAHYAANSAILEAMPDDaKTIHIVDFHMGEGVQWPPMMEAIARQ---RKTLRLTSIKWEENVpSPWSFEETKRRLHKHARVLGLNLKVEEM 254
                         **************888799**********************85...457********99999999***********************99 PP

                GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse..........sFlerfl 258
                           ++l + + ++ +++  +E  + n+++ l ++  ++  +     e+L++ k+l +  + +  ++   +  +++           F   f 
  WALNUT_00030901-RA 255 GIEDLVSETRKMQNMDGrREWWVFNCMFLLPHMGISRSRTL--AMEFLNVAKELVSSSINCRTSNrgiITFGDGdpceklkhclGFGSFFE 343
                         6666655555555555579***********99984444443..479999999997766655555522211122245555556678999999 PP

                GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                           +e+y al++sl +++p++  e+ri +E  ++++ i++v   ++        ++++  +  ee G++  +ls+++ ++ak ++++ + s 
  WALNUT_00030901-RA 344 GHVEHYQALLESLRMNFPPHLkEARIAIECLFVAPYISSVSWLQKWV------KMREGYHLQEELGLEGRRLSQEILAEAKEMVKEGEsSY 428
                         99***********99999887699999****9999999876666665......45555788899***********************9899 PP

                GRAS 348 gyrveee.sgslvlgWkdrpLvsvSaWr 374
                         g r+ ee  +++vl Wk+ ++  vS W+
  WALNUT_00030901-RA 429 GVRIVEEtGNEMVLEWKGITMARVSIWT 456
                         9987755278999**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.22761434IPR005202Transcription factor GRAS
PfamPF035141.3E-4288456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLSMRSNLST ELGILENILN DDDIVRMDYI TGESEGSFSL EQISTDGEYF LCPSASMISE  60
SSPDISSNQP HVTLPGEDME INNLQSVDHL LKAYGEALEK DERELAQVIL RRISEKVSPI  120
GESLERVAFF LSQDIDQNQG DYLKLESSKN FEAAFQAFYQ SFPEGKFAHY AANSAILEAM  180
PDDAKTIHIV DFHMGEGVQW PPMMEAIARQ RKTLRLTSIK WEENVPSPWS FEETKRRLHK  240
HARVLGLNLK VEEMGIEDLV SETRKMQNMD GRREWWVFNC MFLLPHMGIS RSRTLAMEFL  300
NVAKELVSSS INCRTSNRGI ITFGDGDPCE KLKHCLGFGS FFEGHVEHYQ ALLESLRMNF  360
PPHLKEARIA IECLFVAPYI SSVSWLQKWV KMREGYHLQE ELGLEGRRLS QEILAEAKEM  420
VKEGESSYGV RIVEETGNEM VLEWKGITMA RVSIWTDKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1410545521374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852984.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4H9Z90.0A0A2I4H9Z9_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGEMJ077651e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-17GRAS family protein