PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030891-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 745aa MW: 81718.8 Da PI: 6.2638 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 315 | 335 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg WALNUT_00030891-RA 315 PCPDFRK-GACRRGDMCEYAHG 335 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.49E-16 | 54 | 174 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.0E-17 | 94 | 175 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.23E-15 | 94 | 173 | No hit | No description |
PROSITE profile | PS50297 | 18.165 | 95 | 203 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0025 | 95 | 125 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 1.2E-9 | 95 | 164 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.835 | 130 | 165 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0044 | 130 | 162 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-5 | 315 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 343 | 373 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 46 | 345 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MKCSANERMC CGSEWLKLRS FPTSNSIFID ESTPSSIDMN HLTIETEDTF ASLLELAANN 60 DIEGFKRSIE RDPSGIDEIG LWYGRKKGSK QMVNEHRTPL MVAATYGSID VMKLILSLSD 120 ADVNRPCGLD KSTALHCAAS GGAVNAVDAV NLLLASGADV NSVDANGHSP IDVIVVPPKF 180 QEAKLTLEQL LKPHGSDVER KLMVLTGTMS LNSPPLSSSP ENGSLSVSDF TSLTKMNFSD 240 LPIYSMSEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN 300 ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTNCARR 360 VCFFAHTTEE LRPLYVSTGS AVPSPRSSTS GAAAMDFAAA MSLLPGSPSS VSVMSPSPFT 420 PPMSPSANGM SHAAWPQPNV PALHLPGSNL HSSRLRSSLN ARDIPTEDFD MLPDFDLQQQ 480 QLLNDLSCLS QPSMSSNSLN RSGRFKTLTP SNLDDLFSTE SSSPRFADQT LASAVFSPTH 540 KSAVLNQYQQ QQQQQSMLSP INTNFSPKNV DHHLLQASFG VPTSGRMSPR SVEPISPMGS 600 RVSMLAQREK QQQFRSLSSR ELGSNSASIV GSPANSWSKW GSSNGKLDWA VSTEELGKLR 660 RSSSFELGNN GEEPDLSWVQ SLVKESPTDI KDKLVTPVSD VAATPSEVSN MNSQTESVDH 720 AVLGAWLEQM HLEQMQLDHL VAQQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 90 | GRKKGSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808172.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2I4DM15 | 0.0 | A0A2I4DM15_JUGRE; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | EMJ05825 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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