PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030405-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 501aa    MW: 55100.2 Da    PI: 5.4135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030405-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.33.5e-1011194991373
                GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfs 85 
                         lv+lL+++Aea++  +++  la+ +L rl+e++sp++ ++m+RlaayfteAL   l +    +++   +  p +++++++++ laa++l++
  WALNUT_00030405-RA 119 LVHLLMAAAEALTGANKSrdLARVILVRLKEMVSPTDgTNMERLAAYFTEALYGLLEGaggVQPKHLISNGPHRDERHHHTDLLAAFQLLQ 209
                         68**********997776669***********9987769*****************994222222222333444444669*********** PP

                GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg....skeeleetgerLakfAe 170
                         ++sP++kf+h+taNqa+leav++++rvHi+Dfdi++G+QW++L+qaLas+++gpp  +lRiT++ +  sg    s  +++etg+rL+ fA+
  WALNUT_00030405-RA 210 DMSPYVKFGHFTANQAVLEAVAQDRRVHIVDFDIMEGIQWASLMQALASKKDGPPapHLRITAITRGGSGsgrrSIGTIQETGRRLTAFAA 300
                         *************************************************99765555*********888788988999************* PP

                GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                         ++g pf+f     ++ e++++++L++ +gEal+Vn++l+l ++ ++  ++     ++L+  k+l+P++v++ve+e+         +f+++l
  WALNUT_00030405-RA 301 SIGQPFSFYQCRLDKDETFRPSALKLVRGEALVVNCILHLPHFNHRAPQSV---ASFLSGAKTLNPRIVTLVEEEVGP----IGGGFMDTL 384
                         *********99999*****************************85555444...59*******************986....55677889* PP

                GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetl.ekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                         ++ysa+fdslea +p +s++r+ vEr++lg++i+  +a +  +  r  + e+l + W e+l + GF+p+p+s  + +qaklll  ++ dgy
  WALNUT_00030405-RA 385 HHYSAVFDSLEADFPMHSRARALVERVFLGPRISASLARAYLAcgRDGDDESLnGPWGEWLAAGGFRPIPISFANHCQAKLLLGLFN-DGY 474
                         ************************************99998776688887776268*******************************.*** PP

                GRAS 350 rveee.sgslvlgWkdrpLvsvSaW 373
                         rvee  ++ + lgWk+r+L+s+S+W
  WALNUT_00030405-RA 475 RVEELaNNKIALGWKSRRLLSASVW 499
                         ***98466777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.25493480IPR005202Transcription factor GRAS
PfamPF035141.2E-98119499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSLVISSSIA IAMAMDDTLE LDYSVHSNNT TTTAEYDHDY GCNWQYSWPP VDDWEAVAGC  60
DDFRDLIESM MDDGELNFNL QHPCEQVVEE GNSSNSDMTA DTMVVDEETK GDDSKGVKLV  120
HLLMAAAEAL TGANKSRDLA RVILVRLKEM VSPTDGTNME RLAAYFTEAL YGLLEGAGGV  180
QPKHLISNGP HRDERHHHTD LLAAFQLLQD MSPYVKFGHF TANQAVLEAV AQDRRVHIVD  240
FDIMEGIQWA SLMQALASKK DGPPAPHLRI TAITRGGSGS GRRSIGTIQE TGRRLTAFAA  300
SIGQPFSFYQ CRLDKDETFR PSALKLVRGE ALVVNCILHL PHFNHRAPQS VASFLSGAKT  360
LNPRIVTLVE EEVGPIGGGF MDTLHHYSAV FDSLEADFPM HSRARALVER VFLGPRISAS  420
LARAYLACGR DGDDESLNGP WGEWLAAGGF RPIPISFANH CQAKLLLGLF NDGYRVEELA  480
NNKIALGWKS RRLLSASVWS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5311050010379Protein SCARECROW
5b3h_A1e-531105009378Protein SCARECROW
5b3h_D1e-531105009378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806667.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2I4DHP80.0A0A2I4DHP8_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGXP_006472746.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-158GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]