PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00030364-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 41690 Da PI: 5.6794 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.7e-53 | 22 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev WALNUT_00030364-RA 22 PPGFRFHPTDEELITFYLASKVFNGSFCG-VDIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 111 9*************************877.34***************8888899************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl WALNUT_00030364-RA 112 YSAsSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 *9978889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-63 | 18 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.495 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MLTMEEILCE LAGEDISDQG FPPGFRFHPT DEELITFYLA SKVFNGSFCG VDIAEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK KGEKRNTLLQ 180 GQSYLLEAAS SATSGSLPPL LEEAPNTLLE CQLQDLQNSL LINNQDDLKS LIHPIVSQSN 240 PFPINGFLPS FSSSTTTATT KNTNTDNNLS QSPLPSILSK SRLSHQDCST YKEQITIQKQ 300 CKTEANFSHF QMPADANLQW MDRIQTSTNQ YQNSLLVEID CGLLGLSAFA SASAIDAPVN 360 ALPTSVALNS SGF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 21 | 173 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018858137.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-109 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2I4HPT4 | 0.0 | A0A2I4HPT4_JUGRE; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | POPTR_0002s00730.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-111 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|