PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00029198-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39476.1 Da PI: 6.743 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.5 | 2.1e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv ++k+++ +++ evd++k+ePw+Lp k+k +e+ewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke WALNUT_00029198-RA 16 LPPGFRFHPTDEELITHYLSQKVLNTKFSA-RAVGEVDLNKSEPWELPWKAKMGETEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKE 105 79**************************99.88***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle WALNUT_00029198-RA 106 IYR-GKALVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ***.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-64 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MENVSSLGKE EEQIELPPGF RFHPTDEELI THYLSQKVLN TKFSARAVGE VDLNKSEPWE 60 LPWKAKMGET EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK ALVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTANNEWVI CRVFKKISAG KKTHVSELGS 180 PNSYANESHP SVLPQLVNSS PYSNERRTSF GETSHVTCFS DSMKDHKIKE DMVESFDTPF 240 LAASSSSNPS YISSAPNSSG HLSNTGTLHY PDTLFMHEQY SVLRMMLESN APDMKRNEKV 300 EFSPETGFST DMSSAVSNHD MAQKSFEDQE DPSTSAGPGP VDIACLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-56 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018858323.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like isoform X1 | ||||
Swissprot | Q9FLJ2 | 1e-134 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2I4HQ89 | 0.0 | A0A2I4HQ89_JUGRE; NAC domain-containing protein 100-like isoform X1 | ||||
STRING | VIT_14s0108g01070.t01 | 1e-159 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-135 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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