PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00029052-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 360aa MW: 39599.7 Da PI: 4.7551 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 286 | 326 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq WALNUT_00029052-RA 286 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 326 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.224 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 276 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-12 | 281 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 282 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.28E-12 | 285 | 330 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 286 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEPMGAICER EWGSLGGMYI AEESEFMAQL LHNNASLPND LIGDSSLRAP SDFWPGYESN 60 MNGEGLSESS YFSLYMPSSN FYSFSQESNY NGGSSGQQCY GSSDSHPVLA SDDSSISMDF 120 CMMNVKRTGS FLLEGYDCLN QEKTDGNAEE SAGNVPAVVL HSEKDSQHRK ESEKPPPESI 180 PEEKCNNPPG NSKKRSQSSR DIRKKKRMAQ SEKNKKTGSN EEDSNPGIGE QSSGSFSSED 240 DCTASQELNG GASSGLSRKV PASPDLNGKT RASRGSATDP QSLYARKRRE RINERLRILQ 300 NLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY APIAYNGMDL GLDLKINPPR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 206 | KKRSQSSRDIRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018837996.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
Refseq | XP_018846130.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
Refseq | XP_018846131.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
Refseq | XP_018852128.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
TrEMBL | A0A2I4GQF1 | 0.0 | A0A2I4GQF1_JUGRE; transcription factor bHLH84-like | ||||
STRING | cassava4.1_026804m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-46 | bHLH family protein |