PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028717-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 324aa    MW: 35865.7 Da    PI: 7.0491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028717-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-104897154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL+ +v+ +k+L
  WALNUT_00028717-RA 48 RKVQKADREKLRRDRLNEQFLELGSTLDPD----RPKNDKATILTDTVQVLKDL 97
                        5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9954797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1147120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.32E-748101No hitNo description
PfamPF000108.1E-84897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1248115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-753103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDQWMTDDKL KADLAPSSSS QPPNRSHNSH PDSRRSVDVE IKDPVATRKV QKADREKLRR  60
DRLNEQFLEL GSTLDPDRPK NDKATILTDT VQVLKDLTAE VNRLKTECAV LTEEARELTQ  120
EKNELREEKA SIKTDIDNMN VQYQQRVRVM FPWAAIDPSV VMGPPYSYPV PVPVPPGAIP  180
MHPSLQPYPF FGNQNPGAIH NPCSTFIPYP TPPNPPVEQP LAQRASTSQI SSKQDSKSKS  240
SSAHQRVNNV ERCDDSNDVA TDLELKMPGS SAQQDSSSGG TKGKQSQRKE RSVTENSSSS  300
RYSSSQGLQD SSSNSVGDVP KSKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846432.10.0PREDICTED: transcription factor bHLH121-like isoform X1
RefseqXP_018846443.10.0PREDICTED: transcription factor bHLH121-like isoform X1
RefseqXP_018846445.10.0PREDICTED: transcription factor bHLH121-like isoform X1
RefseqXP_018858168.10.0PREDICTED: transcription factor bHLH121-like isoform X1
SwissprotQ9LT231e-80BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2I4GRB30.0A0A2I4GRB3_JUGRE; transcription factor bHLH121-like isoform X1
STRINGXP_009379403.11e-165(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-66bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]