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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | WALNUT_00028540-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family | G2-like | ||||||||
| Protein Properties | Length: 325aa MW: 35554.8 Da PI: 6.6789 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 107.8 | 5.6e-34 | 48 | 102 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
WALNUT_00028540-RA 48 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 14.485 | 45 | 105 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 47 | 103 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 8.24E-18 | 47 | 102 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.2E-25 | 48 | 103 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.3E-9 | 50 | 101 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.7E-10 | 134 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 325 aa Download sequence Send to blast |
MYQPKSVNNL SLVQKNSLVH GQHLDCVTSA MDPINGANNL NKSSLASKQR LRWTHELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKADKKE 120 SGDMLSNLDS SSGMQITEAL KLQMEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVFSETSD 180 SGVPGPVSGD NCPDSENKTD PATPAPTSEA PLQEKATNEC APASLSIDES FSSRHEPSTP 240 DSGCHISSPS ESSKDERLIK KQRVLTGGSY AKSEMVLPHQ ILESSLSSSY PQPPSIFLSR 300 EQFEPSSGIS IRNDDHMEKL AGSEL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 5e-24 | 48 | 105 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00252 | DAP | Transfer from AT2G01060 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018805339.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805340.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805341.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805342.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805343.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805344.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805345.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Refseq | XP_018805346.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
| Swissprot | Q9SJW0 | 1e-122 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A2I4DDX1 | 0.0 | A0A2I4DDX1_JUGRE; myb family transcription factor PHL7-like isoform X1 | ||||
| STRING | XP_002525238.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8610 | 33 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 1e-109 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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