PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028334-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 30255.7 Da PI: 7.1293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.4 | 2.2e-43 | 4 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF Pt+eelv++yL++k+eg++ +++vi+ +diy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+ gyW WALNUT_00028334-RA 4 LPPGFRFYPTEEELVSFYLHNKLEGTRedlnRVMDRVIPVLDIYESNPWDLPQfsgdLCYGNPEQWFFFIPRQEREARGGRPRRLTTIGYW 94 79************************966643344579999***********656764455778*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 katg+ + v+s+k++ +g+k+t+vfy+grap+g+k++W m+ey+ WALNUT_00028334-RA 95 KATGSPNYVYSSKNRIIGVKRTMVFYHGRAPNGRKSEWKMNEYK 138 *******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-47 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.98 | 4 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDDLPPGFRF YPTEEELVSF YLHNKLEGTR EDLNRVMDRV IPVLDIYESN PWDLPQFSGD 60 LCYGNPEQWF FFIPRQEREA RGGRPRRLTT IGYWKATGSP NYVYSSKNRI IGVKRTMVFY 120 HGRAPNGRKS EWKMNEYKAI EGEASASTGA VPTLRQEFSL CRVYKKTKCL RAFDRRPTGS 180 VVIGHGEPAT QQIHHGDDQA VPRSSGLNLP FTDQRTTSPE SSSSGDHGQP GREGKNKGMA 240 VDDDQSLWDW DQQLNNWFRP DGME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-33 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-33 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018849266.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Refseq | XP_018854048.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-75 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2I4HD09 | 0.0 | A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like | ||||
STRING | EOY08332 | 1e-112 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-77 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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