PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028307-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 265aa MW: 30442.2 Da PI: 5.1476

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028307-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.8	1.7e-23	62	143	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH + WALNUT_00028307-RA 62 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMMKFRLMDSKRWRIIEVELEHNHLI 143 9*************99997.66779**********99888.....*********************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-20	62	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTMDEVSLNS EPVGDDDADE FEIEGDSSMI EYVGQTGIIQ GENPLPPVVG MEFESYEDVY 60 YFYNCYAKEQ GFGVRVSNTW YRKSKERYRG KLSCSSAGFK KKSEANRPRP ETRTGCPAMM 120 KFRLMDSKRW RIIEVELEHN HLISSKSGKF YKSHKHLGVG TKRTLQLDGT EEVPKVRLFR 180 TVVINAEDNG SIDVDEGEFG NNREVEGMYS CFSTRQLNVD GPIFTYIFKE QVVEEGRKSQ 240 DRYKFALQAM EELLNKLHLV GDQPM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806942.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_018806943.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_018806944.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	8e-41	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2I4DIH0	1e-141	A0A2I4DIH0_JUGRE; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008228718.1	1e-122	(Prunus mume)
STRING	EMJ16209	1e-122	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-43	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]