PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028043-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 346aa    MW: 39080.6 Da    PI: 6.7886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028043-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-173178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd llv +++++G+g+W++++   g+ R+ k+c++rw +yl
  WALNUT_00028043-RA 31 KGPWTPEEDILLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 78
                        79******************************99************97 PP
2Myb_DNA-binding49.11.3e-1584129148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  WALNUT_00028043-RA  84 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 129
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-242281IPR009057Homeodomain-like
PROSITE profilePS5129424.9072682IPR017930Myb domain
SuperFamilySSF466893.04E-3028125IPR009057Homeodomain-like
SMARTSM007171.3E-143080IPR001005SANT/Myb domain
PfamPF002491.8E-163178IPR001005SANT/Myb domain
CDDcd001671.68E-113378No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2582134IPR009057Homeodomain-like
SMARTSM007171.8E-1583131IPR001005SANT/Myb domain
PROSITE profilePS5129420.08683133IPR017930Myb domain
PfamPF002491.3E-1484129IPR001005SANT/Myb domain
CDDcd001671.59E-1086128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MRQNIRRLAK RRERVLEMGR PPCCDKEGVK KGPWTPEEDI LLVSYIQEHG PGNWRAVPTN  60
TGLLRCSKSC RLRWTNYLRP GIKRGNFTDQ EEKMIIHLQA LLGNRWAAIA SYLPQRTDND  120
IKNYWNTHLK KKLKKLQTGP EEHDTRDGFS ASQPMSRGQW ERRLQTDIHM AKQALRDALS  180
QEKQSYLSEL KSSNGCSNAI PLAQSSSTYA SSTENIARLL KGWMRNPQNP SQTNSEMTQN  240
SLNSMSGTDS VSSEGTPNKA NDKDLIPSEA FDSLFGFESF DPSHSDTSTQ SMSPEETLFQ  300
DESKPDSGDL LPLSLLEKWL FDEGASQGKD FLSDITLDDS TTANLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-253113358159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-253113358159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-253113327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295701e-109KP229570.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB14) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817045.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-117MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2I4ECC00.0A0A2I4ECC0_JUGRE; myb-related protein 306-like
STRINGVIT_14s0108g00830.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-104myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]