PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028027-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24509.8 Da PI: 6.05 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 26 | 70 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++s++qvtfskRr+g++KKA EL+vLC+aeva+i+fs++++++ + WALNUT_00028027-RA 26 EESKKQVTFSKRRAGLFKKAGELCVLCGAEVAIIVFSPHNNVFCF 70 6799************************************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.32 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-27 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-26 | 15 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.45E-31 | 15 | 86 | No hit | No description |
PRINTS | PR00404 | 5.0E-18 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-22 | 26 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVIQKKMSEG KKTRGRQRIE IKELAEESKK QVTFSKRRAG LFKKAGELCV LCGAEVAIIV 60 FSPHNNVFCF GHPDVETVLD HYLTGNHSSF SHTSSSDLHD QNLNNLNNVA AAELMNRQYA 120 EAQEELGREK KRLVEIEEEV KRKKMENNGE YLWWEEAVHE NMELEEMEHY MSALQEMRWK 180 VGSRLEQFRM MRSATHDDAC AWDSWETMLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-16 | 15 | 95 | 1 | 81 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-16 | 15 | 95 | 2 | 82 | MEF2C |
5f28_B | 2e-16 | 15 | 95 | 2 | 82 | MEF2C |
5f28_C | 2e-16 | 15 | 95 | 2 | 82 | MEF2C |
5f28_D | 2e-16 | 15 | 95 | 2 | 82 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 143 | KKRLVEIEEEVKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018809126.1 | 1e-151 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_018809127.1 | 1e-151 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_018809128.1 | 1e-151 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2I4DPQ0 | 1e-150 | A0A2I4DPQ0_JUGRE; agamous-like MADS-box protein AGL61 | ||||
STRING | EMJ20977 | 9e-51 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-33 | AGAMOUS-like 61 |