PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027735-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23116.2 Da PI: 6.7986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 15 | 64 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 ++E++RR++++ +++L +llP+ + +++ s + +A++YI sL+ WALNUT_00027735-RA 15 RRIIEKNRRNQMKVLYSRLNSLLPNpD---SKEAvHSLPDQIDEAINYITSLE 64 579**********************44...44446**************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-10 | 8 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.87E-5 | 8 | 65 | No hit | No description |
PROSITE profile | PS50888 | 11.452 | 10 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-9 | 13 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-4 | 16 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDHQRSQSSS TKVERRIIEK NRRNQMKVLY SRLNSLLPNP DSKEAVHSLP DQIDEAINYI 60 TSLETKLKKS KEKKESLTSR KKRPYTCTNF EETAGLKSPK IEIRETGSTL EIVLITGLDN 120 QFIFYEMIHI LHGEQAEVLN ASFSTSGDSV LHVVHAETVG CSFDFGAAKV TERLKRLVYG 180 STSDVELSPD LWDLIPINSE AWGF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 83 | KKSKEKKESLTSRKKRP |
2 | 68 | 81 | KSKEKKESLTSRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842915.1 | 1e-151 | PREDICTED: uncharacterized protein LOC109007619 | ||||
TrEMBL | A0A2I4GG90 | 1e-149 | A0A2I4GG90_JUGRE; uncharacterized protein LOC109007619 | ||||
STRING | EMJ00063 | 3e-81 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-27 | bHLH family protein |