PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00027010-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 408aa MW: 45937.3 Da PI: 8.4138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00027010-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	60	193	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL ++v+++++++ ++i evd++k+ePw+Lp + k+k +ekewyfF+ rd+ky+tg r+nrat++gyWk WALNUT_00027010-RA 60 LPPGFRFHPTDEELISYYLLNRVTDSRFSA-RAIGEVDLNKSEPWELPcMfaaktgKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWK 149 79*************************9.89***********547888776777999************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atgkdke+++ +++lvg+kktLvfykgrap+gekt+Wvmheyrle WALNUT_00027010-RA 150 ATGKDKEIYR-GKALVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 193 ******.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-62	56	217	IPR003441	NAC domain
PROSITE profile	PS51005	59.081	60	217	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	61	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MHVGTEAEFC ILLLVFIKSL VLKTGFADKK KEKRKAIGFS GFQEMENVSE LYKEEEQMDL 60 PPGFRFHPTD EELISYYLLN RVTDSRFSAR AIGEVDLNKS EPWELPCMFA AKTGKAKMGE 120 KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KALVGMKKTL VFYKGRAPRG 180 EKTNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFEKTSG GKKIHIPGIV GLGSFGGELG 240 PPNLPPLMDS SPYDGNNTKP FAESAYVPCF SNLMDAQRNQ QGMAGSFNDS LYGVSSNPTD 300 NLSRIPLSSS FYSTQTTPIP GNLQFQGSVT MQDHAYLRAI LVNQGSIMRQ SFKTEREMVS 360 VSQETVLTTD VNAEISSVMS NLEMGRRPFQ EAPSTSAGPE DLDNLWNY

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MHVGTEAEFC ILLLVFIKSL VLKTGFADKK KEKRKAIGFS GFQEMENVSE LYKEEEQMDL  60
PPGFRFHPTD EELISYYLLN RVTDSRFSAR AIGEVDLNKS EPWELPCMFA AKTGKAKMGE  120
KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KALVGMKKTL VFYKGRAPRG  180
EKTNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFEKTSG GKKIHIPGIV GLGSFGGELG  240
PPNLPPLMDS SPYDGNNTKP FAESAYVPCF SNLMDAQRNQ QGMAGSFNDS LYGVSSNPTD  300
NLSRIPLSSS FYSTQTTPIP GNLQFQGSVT MQDHAYLRAI LVNQGSIMRQ SFKTEREMVS  360
VSQETVLTTD VNAEISSVMS NLEMGRRPFQ EAPSTSAGPE DLDNLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-52	41	223	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-52	41	223	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-52	41	223	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-52	41	223	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	41	223	8	174	NAC domain-containing protein 19
3swm_B	1e-51	41	223	8	174	NAC domain-containing protein 19
3swm_C	1e-51	41	223	8	174	NAC domain-containing protein 19
3swm_D	1e-51	41	223	8	174	NAC domain-containing protein 19
3swp_A	1e-51	41	223	8	174	NAC domain-containing protein 19
3swp_B	1e-51	41	223	8	174	NAC domain-containing protein 19
3swp_C	1e-51	41	223	8	174	NAC domain-containing protein 19
3swp_D	1e-51	41	223	8	174	NAC domain-containing protein 19
4dul_A	9e-52	41	223	5	171	NAC domain-containing protein 19
4dul_B	9e-52	41	223	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018808641.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-149	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I4DNB3	0.0	A0A2I4DNB3_JUGRE; NAC domain-containing protein 100-like
STRING	cassava4.1_010528m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-146	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]