PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026998-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 378aa    MW: 43326 Da    PI: 8.1525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026998-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-184388147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  WALNUT_00026998-RA 43 RGHWRPAEDEQLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 88
                        899*****************************.***********996 PP
2Myb_DNA-binding605e-1995138146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  WALNUT_00026998-RA  95 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 138
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6463889IPR017930Myb domain
SMARTSM007179.0E-154291IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-2942136IPR009057Homeodomain-like
PfamPF002495.1E-174388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-274496IPR009057Homeodomain-like
CDDcd001676.81E-144687No hitNo description
PROSITE profilePS5129428.36690144IPR017930Myb domain
SMARTSM007172.4E-1694142IPR001005SANT/Myb domain
PfamPF002498.2E-1695137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2197143IPR009057Homeodomain-like
CDDcd001679.72E-8106137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCRNSNSYSG GRTHNARPEA AAMEDSAAGS SDDNKSTNTT CPRGHWRPAE DEQLRQLVEQ  60
YGAQNWNSIA EKLQGRSGKS CRLRWFNQLD PRINRRPFTE EEEERLLAAH RIHGNKWALI  120
ARLFPGRTDN AVKNHWHVIM ARKQREQSKI CGKRTYQDVY DDSNTSSSTF HERKTLCQYL  180
GEFSSKVGSS STESSRFFEF RNPNKEIRSI VSDSVPSSCL LSWNFASMGT VESNSSSMDF  240
LRREGRDHYF KSSSRDHCIS DQYHSNSSDK YLYRYHPNSS VYGSNYRRSC TKLGLPNYTM  300
VVPGPFGYQL NLGDDYEPNG RMIERDELMS FCDNSPMTLD QKFMKATADH QQKIKGDIES  360
IEPKEIPFID FLGVGITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32431437107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807003.10.0PREDICTED: myb-related protein A-like
TrEMBLA0A2I4DIN10.0A0A2I4DIN1_JUGRE; myb-related protein A-like
STRINGPOPTR_0005s20870.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-62myb domain protein 52