PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00026914-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 38765.3 Da PI: 6.5064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.4e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed++l+ ++k +G g W+ +++ g++R++k+c++rw++yl WALNUT_00026914-RA 15 RGTWTAIEDKILKGYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ WALNUT_00026914-RA 68 RGNITNDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 111 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.32 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.79E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.887 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGRSPCCSKD QSLNRGTWTA IEDKILKGYI KIHGEGKWRN LPKRAGLKRC GKSCRLRWLN 60 YLRPEIKRGN ITNDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TNIGKNVLLG 120 HPNPTSKRRS SSSNQAQEKP NPTKASAVIE PPEANPGASC TVIRTKATRC TKVIPISTSG 180 PQEPHDHQQQ QQQFDHHTKP VVVEHPSLVL DENHDMTVEF SNCNLEENNL SNFMMDDFEL 240 DKSFLSEFLV NTDFSELSSC IENNNINNEG GSSSTTCDKV HSSPTFIDHA LLVSKETELH 300 GSEDFQLMSP LTDQSEYMDW LFVSKDTLHG SEVNSHDDQS QLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857731.1 | 0.0 | PREDICTED: myb-related protein Zm38-like | ||||
TrEMBL | A0A2I4HNJ7 | 0.0 | A0A2I4HNJ7_JUGRE; myb-related protein Zm38-like | ||||
STRING | XP_008228205.1 | 2e-97 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-60 | myb domain protein 4 |